Analysis of interatomic Contacts of Structural Units in PDB entry:
5C00

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C00 entry

There are 4 chains in PDB entry 5C00 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 43	SER 244
B	LYS 43	SER 244
C	ALA 47	THR 243
D	LYS 49	VAL 239

There are 39 helices in PDB entry 5C00. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	111	Right-handed alpha
Helix 2	AA2	A	122	126	Right-handed 310
Helix 3	AA3	A	131	146	Right-handed alpha
Helix 4	AA4	A	148	162	Right-handed alpha
Helix 5	AA5	A	162	167	Right-handed alpha
Helix 6	AA6	A	171	182	Right-handed alpha
Helix 7	AA7	A	185	195	Right-handed alpha
Helix 8	AA8	A	197	217	Right-handed alpha
Helix 9	AA9	A	234	236	Right-handed 310
Helix 10	AB1	A	237	244	Right-handed alpha
Helix 11	AB2	B	91	111	Right-handed alpha
Helix 12	AB3	B	122	126	Right-handed 310
Helix 13	AB4	B	131	146	Right-handed alpha
Helix 14	AB5	B	148	162	Right-handed alpha
Helix 15	AB6	B	162	167	Right-handed alpha
Helix 16	AB7	B	171	182	Right-handed alpha
Helix 17	AB8	B	185	194	Right-handed alpha
Helix 18	AB9	B	197	217	Right-handed alpha
Helix 19	AC1	B	234	236	Right-handed 310
Helix 20	AC2	B	237	243	Right-handed alpha
Helix 21	AC3	C	91	111	Right-handed alpha
Helix 22	AC4	C	122	126	Right-handed 310
Helix 23	AC5	C	131	146	Right-handed alpha
Helix 24	AC6	C	148	162	Right-handed alpha
Helix 25	AC7	C	162	167	Right-handed alpha
Helix 26	AC8	C	171	182	Right-handed alpha
Helix 27	AC9	C	185	194	Right-handed alpha
Helix 28	AD1	C	197	217	Right-handed alpha
Helix 29	AD2	C	234	236	Right-handed 310
Helix 30	AD3	C	237	243	Right-handed alpha
Helix 31	AD4	D	91	110	Right-handed alpha
Helix 32	AD5	D	122	126	Right-handed 310
Helix 33	AD6	D	131	146	Right-handed alpha
Helix 34	AD7	D	148	162	Right-handed alpha
Helix 35	AD8	D	162	167	Right-handed alpha
Helix 36	AD9	D	171	182	Right-handed alpha
Helix 37	AE1	D	185	195	Right-handed alpha
Helix 38	AE2	D	197	216	Right-handed alpha
Helix 39	AE3	D	234	238	Right-handed 310

There are 4 sheets in PDB entry 5C00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	65	first strand
Strand 2	A	68	72	anti-parallel
Strand 3	A	114	121	anti-parallel
Strand 4	A	81	88	parallel
Strand 5	A	223	226	anti-parallel
Strand 6	A	229	230	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	65	first strand
Strand 2	B	68	72	anti-parallel
Strand 3	B	114	121	anti-parallel
Strand 4	B	81	88	parallel
Strand 5	B	223	226	anti-parallel
Strand 6	B	229	230	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	65	first strand
Strand 2	C	68	72	anti-parallel
Strand 3	C	114	121	anti-parallel
Strand 4	C	81	88	parallel
Strand 5	C	223	226	anti-parallel
Strand 6	C	229	230	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	65	first strand
Strand 2	D	68	72	anti-parallel
Strand 3	D	114	121	anti-parallel
Strand 4	D	81	88	parallel
Strand 5	D	223	226	anti-parallel
Strand 6	D	229	230	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C00

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C00