Analysis of interatomic Contacts of Structural Units in PDB entry:
5C0N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C0N entry

There are 6 chains in PDB entry 5C0N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1	ALA 131
H	GLN 1	PRO 219
L	ASP 1	ARG 216
B	CYS 1	ALA 131
C	GLN 1	VAL 218
D	ASP 1	ARG 216

There are 18 helices in PDB entry 5C0N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	24	Right-handed alpha
Helix 2	AA2	A	26	36	Right-handed alpha
Helix 3	AA3	H	83	87	Right-handed 310
Helix 4	AA4	H	163	165	Right-handed 310
Helix 5	AA5	H	193	195	Right-handed 310
Helix 6	AA6	H	207	210	Right-handed 310
Helix 7	AA7	L	79	83	Right-handed 310
Helix 8	AA8	L	126	131	Right-handed alpha
Helix 9	AA9	L	188	193	Right-handed alpha
Helix 10	AB1	B	15	24	Right-handed alpha
Helix 11	AB2	B	26	36	Right-handed alpha
Helix 12	AB3	C	83	87	Right-handed 310
Helix 13	AB4	C	163	165	Right-handed 310
Helix 14	AB5	C	193	195	Right-handed 310
Helix 15	AB6	C	207	210	Right-handed 310
Helix 16	AB7	D	79	83	Right-handed 310
Helix 17	AB8	D	126	131	Right-handed alpha
Helix 18	AB9	D	188	193	Right-handed alpha

There are 24 sheets in PDB entry 5C0N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	64	first strand
Strand 2	A	48	54	anti-parallel
Strand 3	A	40	45	anti-parallel
Strand 4	A	6	12	anti-parallel
Strand 5	A	122	130	anti-parallel
Strand 6	A	112	119	anti-parallel
Strand 7	A	100	109	anti-parallel
Strand 8	A	90	97	anti-parallel
Strand 9	A	79	87	anti-parallel
Strand 10	A	70	73	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	74	79	anti-parallel
Strand 4	H	66	70	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	114	118	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	44	50	anti-parallel
Strand 6	H	56	58	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	114	118	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	107	110	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	181	191	anti-parallel
Strand 4	H	170	172	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	181	191	anti-parallel
Strand 4	H	176	178	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	201	206	anti-parallel
Strand 3	H	211	216	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	107	112	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	94	95	first strand
Strand 2	L	98	99	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	134	144	anti-parallel
Strand 3	L	178	187	anti-parallel
Strand 4	L	164	168	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	160	first strand
Strand 2	L	150	155	anti-parallel
Strand 3	L	196	202	anti-parallel
Strand 4	L	210	215	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	48	54	anti-parallel
Strand 3	B	40	45	anti-parallel
Strand 4	B	6	12	anti-parallel
Strand 5	B	122	130	anti-parallel
Strand 6	B	112	119	anti-parallel
Strand 7	B	100	109	anti-parallel
Strand 8	B	90	97	anti-parallel
Strand 9	B	79	87	anti-parallel
Strand 10	B	70	73	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	66	70	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	114	118	parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	44	50	anti-parallel
Strand 6	C	56	58	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	114	118	parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	107	110	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	142	152	anti-parallel
Strand 3	C	181	191	anti-parallel
Strand 4	C	170	172	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	142	152	anti-parallel
Strand 3	C	181	191	anti-parallel
Strand 4	C	176	178	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	201	206	anti-parallel
Strand 3	C	211	216	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	107	112	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	98	99	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	134	144	anti-parallel
Strand 3	D	178	187	anti-parallel
Strand 4	D	164	168	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	160	first strand
Strand 2	D	150	155	anti-parallel
Strand 3	D	196	202	anti-parallel
Strand 4	D	210	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C0N

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C0N