Analysis of interatomic Contacts of Structural Units in PDB entry:
5C0O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C0O entry

There are 4 chains in PDB entry 5C0O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLY 5	ALA 254
F	PRO 6	LYS 253
G	GLY 5	ALA 254
H	HIS 36	ALA 254

There are 34 helices in PDB entry 5C0O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	36	43	Right-handed alpha
Helix 2	AA2	E	62	68	Right-handed alpha
Helix 3	AA3	E	78	89	Right-handed alpha
Helix 4	AA4	E	105	116	Right-handed alpha
Helix 5	AA5	E	127	140	Right-handed alpha
Helix 6	AA6	E	153	157	Right-handed 310
Helix 7	AA7	E	173	176	Right-handed 310
Helix 8	AA8	E	177	184	Right-handed alpha
Helix 9	AA9	E	197	209	Right-handed alpha
Helix 10	AB1	F	35	43	Right-handed alpha
Helix 11	AB2	F	62	70	Right-handed alpha
Helix 12	AB3	F	78	89	Right-handed alpha
Helix 13	AB4	F	106	116	Right-handed alpha
Helix 14	AB5	F	128	140	Right-handed alpha
Helix 15	AB6	F	197	206	Right-handed alpha
Helix 16	AB7	F	207	210	Right-handed 310
Helix 17	AB8	G	35	43	Right-handed alpha
Helix 18	AB9	G	62	70	Right-handed alpha
Helix 19	AC1	G	78	90	Right-handed alpha
Helix 20	AC2	G	105	116	Right-handed alpha
Helix 21	AC3	G	127	142	Right-handed alpha
Helix 22	AC4	G	173	176	Right-handed 310
Helix 23	AC5	G	177	185	Right-handed alpha
Helix 24	AC6	G	197	208	Right-handed alpha
Helix 25	AC7	G	209	211	Right-handed 310
Helix 26	AC8	H	37	43	Right-handed alpha
Helix 27	AC9	H	62	70	Right-handed alpha
Helix 28	AD1	H	78	89	Right-handed alpha
Helix 29	AD2	H	105	116	Right-handed alpha
Helix 30	AD3	H	127	142	Right-handed alpha
Helix 31	AD4	H	153	157	Right-handed 310
Helix 32	AD5	H	173	176	Right-handed 310
Helix 33	AD6	H	177	184	Right-handed alpha
Helix 34	AD7	H	197	208	Right-handed alpha

There are 7 sheets in PDB entry 5C0O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	19	first strand
Strand 2	E	7	10	anti-parallel
Strand 3	E	57	59	anti-parallel

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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	151	first strand
Strand 2	E	120	125	parallel
Strand 3	E	96	100	parallel
Strand 4	E	164	169	parallel
Strand 5	E	185	195	parallel
Strand 6	E	245	251	anti-parallel
Strand 7	E	213	229	anti-parallel
Strand 8	G	213	229	anti-parallel
Strand 9	G	245	251	anti-parallel
Strand 10	G	190	195	anti-parallel
Strand 11	G	166	169	parallel
Strand 12	G	96	100	parallel
Strand 13	G	120	125	parallel
Strand 14	G	147	151	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	235	first strand
Strand 2	E	213	229	anti-parallel
Strand 3	G	213	229	anti-parallel
Strand 4	G	232	235	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	19	first strand
Strand 2	F	7	10	anti-parallel
Strand 3	F	56	59	anti-parallel
Strand 4	F	47	48	anti-parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	150	first strand
Strand 2	F	120	124	parallel
Strand 3	F	96	100	parallel
Strand 4	F	166	169	parallel
Strand 5	F	190	195	parallel
Strand 6	F	245	251	anti-parallel
Strand 7	F	213	229	anti-parallel
Strand 8	H	213	229	anti-parallel
Strand 9	H	245	251	anti-parallel
Strand 10	H	185	195	anti-parallel
Strand 11	H	164	169	parallel
Strand 12	H	96	100	parallel
Strand 13	H	120	125	parallel
Strand 14	H	147	151	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	235	first strand
Strand 2	F	213	229	anti-parallel
Strand 3	H	213	229	anti-parallel
Strand 4	H	232	235	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	19	first strand
Strand 2	G	7	10	anti-parallel
Strand 3	G	57	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C0O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C0O