Analysis of interatomic Contacts of Structural Units in PDB entry:
5C0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C0Q entry

There are 4 chains in PDB entry 5C0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4SER 467
B
 ASP 2SER 467
C
 ASP 4GLY 464
D
 VAL 3GLY 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 5C0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 7Right-handed 310
Helix 2
AA2
A
17 28Right-handed alpha
Helix 3
AA3
A
35 40Right-handed alpha
Helix 4
AA4
A
41 54Right-handed alpha
Helix 5
AA5
A
80 86Right-handed alpha
Helix 6
AA6
A
89 107Right-handed alpha
Helix 7
AA7
A
135 154Right-handed alpha
Helix 8
AA8
A
182 189Right-handed alpha
Helix 9
AA9
A
191 201Right-handed alpha
Helix 10
AB1
A
220 223Right-handed 310
Helix 11
AB2
A
224 229Right-handed alpha
Helix 12
AB3
A
249 254Right-handed alpha
Helix 13
AB4
A
257 268Right-handed alpha
Helix 14
AB5
A
277 279Right-handed 310
Helix 15
AB6
A
280 294Right-handed alpha
Helix 16
AB7
A
298 316Right-handed alpha
Helix 17
AB8
A
323 332Right-handed alpha
Helix 18
AB9
A
339 343Right-handed 310
Helix 19
AC1
A
363 369Right-handed alpha
Helix 20
AC2
A
369 376Right-handed alpha
Helix 21
AC3
A
410 419Right-handed alpha
Helix 22
AC4
A
432 439Right-handed 310
Helix 23
AC5
A
451 464Right-handed alpha
Helix 24
AC6
B
4 7Right-handed 310
Helix 25
AC7
B
17 28Right-handed alpha
Helix 26
AC8
B
35 40Right-handed alpha
Helix 27
AC9
B
41 53Right-handed alpha
Helix 28
AD1
B
80 86Right-handed alpha
Helix 29
AD2
B
89 107Right-handed alpha
Helix 30
AD3
B
135 154Right-handed alpha
Helix 31
AD4
B
182 189Right-handed alpha
Helix 32
AD5
B
190 199Right-handed alpha
Helix 33
AD6
B
220 223Right-handed 310
Helix 34
AD7
B
224 229Right-handed alpha
Helix 35
AD8
B
249 254Right-handed alpha
Helix 36
AD9
B
257 268Right-handed alpha
Helix 37
AE1
B
277 279Right-handed 310
Helix 38
AE2
B
280 294Right-handed alpha
Helix 39
AE3
B
298 316Right-handed alpha
Helix 40
AE4
B
323 332Right-handed alpha
Helix 41
AE5
B
339 343Right-handed 310
Helix 42
AE6
B
363 378Right-handed alpha
Helix 43
AE7
B
410 419Right-handed alpha
Helix 44
AE8
B
432 439Right-handed 310
Helix 45
AE9
B
451 464Right-handed alpha
Helix 46
AF1
C
4 7Right-handed 310
Helix 47
AF2
C
17 28Right-handed alpha
Helix 48
AF3
C
35 40Right-handed alpha
Helix 49
AF4
C
41 54Right-handed alpha
Helix 50
AF5
C
80 86Right-handed alpha
Helix 51
AF6
C
89 107Right-handed alpha
Helix 52
AF7
C
135 154Right-handed alpha
Helix 53
AF8
C
182 189Right-handed alpha
Helix 54
AF9
C
191 200Right-handed alpha
Helix 55
AG1
C
220 223Right-handed 310
Helix 56
AG2
C
224 229Right-handed alpha
Helix 57
AG3
C
249 254Right-handed alpha
Helix 58
AG4
C
257 269Right-handed alpha
Helix 59
AG5
C
277 279Right-handed 310
Helix 60
AG6
C
280 294Right-handed alpha
Helix 61
AG7
C
298 316Right-handed alpha
Helix 62
AG8
C
323 332Right-handed alpha
Helix 63
AG9
C
364 369Right-handed alpha
Helix 64
AH1
C
369 376Right-handed alpha
Helix 65
AH2
C
406 410Right-handed 310
Helix 66
AH3
C
413 418Right-handed alpha
Helix 67
AH4
C
432 439Right-handed 310
Helix 68
AH5
C
451 461Right-handed alpha
Helix 69
AH6
D
4 7Right-handed 310
Helix 70
AH7
D
17 28Right-handed alpha
Helix 71
AH8
D
35 40Right-handed alpha
Helix 72
AH9
D
41 55Right-handed alpha
Helix 73
AI1
D
80 86Right-handed alpha
Helix 74
AI2
D
89 107Right-handed alpha
Helix 75
AI3
D
135 154Right-handed alpha
Helix 76
AI4
D
182 189Right-handed alpha
Helix 77
AI5
D
191 200Right-handed alpha
Helix 78
AI6
D
220 223Right-handed 310
Helix 79
AI7
D
224 229Right-handed alpha
Helix 80
AI8
D
249 254Right-handed alpha
Helix 81
AI9
D
257 268Right-handed alpha
Helix 82
AJ1
D
277 279Right-handed 310
Helix 83
AJ2
D
280 294Right-handed alpha
Helix 84
AJ3
D
298 316Right-handed alpha
Helix 85
AJ4
D
323 332Right-handed alpha
Helix 86
AJ5
D
364 376Right-handed alpha
Helix 87
AJ6
D
406 409Right-handed 310
Helix 88
AJ7
D
410 419Right-handed alpha
Helix 89
AJ8
D
432 439Right-handed 310
Helix 90
AJ9
D
451 463Right-handed alpha
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There are 9 sheets in PDB entry 5C0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
59 62parallel
Strand 3
A
31 34parallel
Strand 4
A
9 13parallel
Strand 5
A
273 275parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
205 208parallel
Strand 3
A
242 243parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 335first strand
Strand 2
A
443 446anti-parallel
Strand 3
A
425 429parallel
Strand 4
A
399 404parallel
Strand 5
A
346 352parallel
Strand 6
A
379 386parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 243first strand
Strand 2
B
205 208parallel
Strand 3
B
156 162parallel
Strand 4
B
110 111parallel
Strand 5
B
59 62parallel
Strand 6
B
31 34parallel
Strand 7
B
9 13parallel
Strand 8
B
273 275parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 335first strand
Strand 2
B
443 446anti-parallel
Strand 3
B
425 429parallel
Strand 4
B
399 404parallel
Strand 5
B
347 352parallel
Strand 6
B
380 386parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
242 243first strand
Strand 2
C
205 208parallel
Strand 3
C
156 162parallel
Strand 4
C
110 111parallel
Strand 5
C
59 62parallel
Strand 6
C
31 34parallel
Strand 7
C
9 13parallel
Strand 8
C
273 275parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
334 335first strand
Strand 2
C
443 446anti-parallel
Strand 3
C
425 429parallel
Strand 4
C
399 404parallel
Strand 5
C
347 349parallel
Strand 6
C
380 383parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
241 243first strand
Strand 2
D
205 208parallel
Strand 3
D
156 162parallel
Strand 4
D
110 111parallel
Strand 5
D
59 62parallel
Strand 6
D
31 34parallel
Strand 7
D
9 13parallel
Strand 8
D
273 275parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
384 386first strand
Strand 2
D
349 352parallel
Strand 3
D
400 404parallel
Strand 4
D
425 429parallel
Strand 5
D
443 446parallel
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