Analysis of interatomic Contacts of Structural Units in PDB entry:
5C0W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C0W entry

There are 5 chains in PDB entry 5C0W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	GLU 300
B	MET 1	SER 244
C	LEU 7	ILE 394
D	MET 1	VAL 222
E	HIS 0	ILE 222

There are123 helices in PDB entry 5C0W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	21	Right-handed alpha
Helix 2	AA2	A	84	88	Right-handed 310
Helix 3	AA3	A	98	112	Right-handed alpha
Helix 4	AA4	A	119	122	Right-handed 310
Helix 5	AA5	A	146	162	Right-handed alpha
Helix 6	AA6	A	224	229	Right-handed alpha
Helix 7	AA7	A	258	290	Right-handed alpha
Helix 8	AA8	A	293	298	Right-handed alpha
Helix 9	AA9	B	94	110	Right-handed alpha
Helix 10	AB1	B	134	150	Right-handed alpha
Helix 11	AB2	B	175	182	Right-handed alpha
Helix 12	AB3	B	209	244	Right-handed alpha
Helix 13	AB4	C	18	26	Right-handed alpha
Helix 14	AB5	C	26	36	Right-handed alpha
Helix 15	AB6	C	60	64	Right-handed 310
Helix 16	AB7	C	145	163	Right-handed alpha
Helix 17	AB8	C	190	198	Right-handed alpha
Helix 18	AB9	C	226	240	Right-handed alpha
Helix 19	AC1	C	335	343	Right-handed alpha
Helix 20	AC2	C	370	394	Right-handed alpha
Helix 21	AC3	D	60	78	Right-handed alpha
Helix 22	AC4	D	79	83	Right-handed 310
Helix 23	AC5	D	105	124	Right-handed alpha
Helix 24	AC6	D	150	156	Right-handed alpha
Helix 25	AC7	D	187	218	Right-handed alpha
Helix 26	AC8	E	4	17	Right-handed alpha
Helix 27	AC9	E	89	103	Right-handed alpha
Helix 28	AD1	E	110	115	Right-handed 310
Helix 29	AD2	E	137	150	Right-handed alpha
Helix 30	AD3	E	202	209	Right-handed alpha
Helix 31	AD4	E	240	263	Right-handed alpha
Helix 32	AD5	F	106	125	Right-handed alpha
Helix 33	AD6	F	126	130	Right-handed 310
Helix 34	AD7	F	164	167	Right-handed 310
Helix 35	AD8	F	168	184	Right-handed alpha
Helix 36	AD9	F	222	250	Right-handed alpha
Helix 37	AE1	G	159	169	Right-handed alpha
Helix 38	AE2	G	173	180	Right-handed alpha
Helix 39	AE3	G	200	218	Right-handed alpha
Helix 40	AE4	G	219	238	Right-handed alpha
Helix 41	AE5	H	138	141	Right-handed 310
Helix 42	AE6	H	145	149	Right-handed 310
Helix 43	AE7	H	158	162	Right-handed 310
Helix 44	AE8	H	203	207	Right-handed 310
Helix 45	AE9	H	237	245	Right-handed alpha
Helix 46	AF1	H	290	310	Right-handed alpha
Helix 47	AF2	H	315	326	Right-handed alpha
Helix 48	AF3	H	327	329	Right-handed 310
Helix 49	AF4	H	331	336	Right-handed 310
Helix 50	AF5	H	337	356	Right-handed alpha
Helix 51	AF6	I	208	210	Right-handed 310
Helix 52	AF7	I	219	223	Right-handed 310
Helix 53	AF8	J	54	59	Right-handed alpha
Helix 54	AF9	J	91	99	Right-handed alpha
Helix 55	AG1	J	115	125	Right-handed alpha
Helix 56	AG2	J	125	138	Right-handed alpha
Helix 57	AG3	J	165	185	Right-handed alpha
Helix 58	AG4	J	186	188	Right-handed 310
Helix 59	AG5	J	198	207	Right-handed alpha
Helix 60	AG6	J	217	223	Right-handed alpha
Helix 61	AG7	J	227	233	Right-handed alpha
Helix 62	AG8	J	260	271	Right-handed alpha
Helix 63	AG9	J	303	308	Right-handed alpha
Helix 64	AH1	J	322	326	Right-handed 310
Helix 65	AH2	J	335	339	Right-handed 310
Helix 66	AH3	J	366	383	Right-handed alpha
Helix 67	AH4	J	409	412	Right-handed 310
Helix 68	AH5	J	442	445	Right-handed 310
Helix 69	AH6	J	476	488	Right-handed alpha
Helix 70	AH7	J	496	503	Right-handed alpha
Helix 71	AH8	J	506	510	Right-handed 310
Helix 72	AH9	J	518	525	Right-handed alpha
Helix 73	AI1	J	526	531	Right-handed 310
Helix 74	AI2	J	572	577	Right-handed alpha
Helix 75	AI3	J	581	591	Right-handed alpha
Helix 76	AI4	J	605	610	Right-handed alpha
Helix 77	AI5	J	653	663	Right-handed alpha
Helix 78	AI6	J	668	692	Right-handed alpha
Helix 79	AI7	J	721	746	Right-handed alpha
Helix 80	AI8	J	759	762	Right-handed 310
Helix 81	AI9	J	763	775	Right-handed alpha
Helix 82	AJ1	J	782	792	Right-handed alpha
Helix 83	AJ2	J	800	813	Right-handed alpha
Helix 84	AJ3	J	822	824	Right-handed 310
Helix 85	AJ4	J	825	830	Right-handed 310
Helix 86	AJ5	J	848	862	Right-handed alpha
Helix 87	AJ6	J	868	872	Right-handed 310
Helix 88	AJ7	J	873	911	Right-handed alpha
Helix 89	AJ8	J	942	944	Right-handed 310
Helix 90	AJ9	J	947	951	Right-handed 310
Helix 91	AK1	K	6	26	Right-handed alpha
Helix 92	AK2	K	28	35	Right-handed alpha
Helix 93	AK3	K	36	61	Right-handed alpha
Helix 94	AK4	K	79	106	Right-handed alpha
Helix 95	AK5	K	132	136	Right-handed 310
Helix 96	AK6	K	161	166	Right-handed alpha
Helix 97	AK7	K	183	190	Right-handed alpha
Helix 98	AK8	K	193	198	Right-handed 310
Helix 99	AK9	K	218	230	Right-handed alpha
Helix 100	AL1	K	273	276	Right-handed 310
Helix 101	AL2	K	277	282	Right-handed alpha
Helix 102	AL3	K	293	305	Right-handed alpha
Helix 103	AL4	K	314	322	Right-handed alpha
Helix 104	AL5	K	327	336	Right-handed alpha
Helix 105	AL6	K	342	347	Right-handed 310
Helix 106	AL7	K	355	368	Right-handed alpha
Helix 107	AL8	K	368	383	Right-handed alpha
Helix 108	AL9	K	385	399	Right-handed alpha
Helix 109	AM1	K	423	432	Right-handed alpha
Helix 110	AM2	K	438	454	Right-handed alpha
Helix 111	AM3	K	459	464	Right-handed alpha
Helix 112	AM4	K	465	475	Right-handed alpha
Helix 113	AM5	K	480	485	Right-handed alpha
Helix 114	AM6	K	492	497	Right-handed alpha
Helix 115	AM7	K	497	519	Right-handed alpha
Helix 116	AM8	K	525	537	Right-handed alpha
Helix 117	AM9	K	538	560	Right-handed alpha
Helix 118	AN1	K	571	576	Right-handed alpha
Helix 119	AN2	K	595	612	Right-handed alpha
Helix 120	AN3	L	7	29	Right-handed alpha
Helix 121	AN4	L	32	40	Right-handed alpha
Helix 122	AN5	L	42	69	Right-handed alpha
Helix 123	AN6	L	73	117	Right-handed alpha

There are 44 sheets in PDB entry 5C0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	54	65	anti-parallel
Strand 4	A	130	142	anti-parallel
Strand 5	A	76	80	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	54	65	anti-parallel
Strand 4	A	130	142	anti-parallel
Strand 5	A	124	126	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	185	186	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	173	176	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	244	257	anti-parallel
Strand 5	B	195	201	anti-parallel
Strand 6	B	184	190	anti-parallel
Strand 7	B	158	166	anti-parallel
Strand 8	B	169	172	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	244	257	anti-parallel
Strand 5	B	205	206	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	38	44	anti-parallel
Strand 3	B	47	57	anti-parallel
Strand 4	B	121	130	anti-parallel
Strand 5	B	71	78	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	76	82	anti-parallel
Strand 3	C	85	92	anti-parallel
Strand 4	C	214	220	anti-parallel
Strand 5	C	131	136	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	94	96	anti-parallel
Strand 3	F	16	17	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	165	166	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	188	first strand
Strand 2	C	175	179	anti-parallel
Strand 3	C	242	249	parallel
Strand 4	C	275	283	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	332	first strand
Strand 2	C	293	300	anti-parallel
Strand 3	C	345	351	anti-parallel
Strand 4	C	357	364	anti-parallel
Strand 5	D	173	183	anti-parallel
Strand 6	D	157	168	anti-parallel
Strand 7	D	130	139	anti-parallel
Strand 8	D	145	147	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	15	21	anti-parallel
Strand 3	D	24	34	anti-parallel
Strand 4	D	86	96	anti-parallel
Strand 5	D	46	53	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	81	first strand
Strand 2	E	120	132	parallel
Strand 3	E	57	68	anti-parallel
Strand 4	E	46	51	anti-parallel
Strand 5	E	34	38	anti-parallel
Strand 6	H	7	11	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	157	first strand
Strand 2	E	172	179	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	199	first strand
Strand 2	E	186	193	anti-parallel
Strand 3	E	211	218	anti-parallel
Strand 4	E	221	228	anti-parallel
Strand 5	F	209	215	anti-parallel
Strand 6	F	199	204	anti-parallel
Strand 7	F	192	196	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	50	first strand
Strand 2	F	58	66	anti-parallel
Strand 3	F	69	82	anti-parallel
Strand 4	F	133	145	anti-parallel
Strand 5	F	92	99	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	40	46	anti-parallel
Strand 3	G	53	59	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	27	first strand
Strand 2	G	34	36	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	150	first strand
Strand 2	G	118	125	anti-parallel
Strand 3	G	133	135	anti-parallel
Strand 4	G	95	98	parallel
Strand 5	G	83	87	anti-parallel
Strand 6	G	71	79	anti-parallel
Strand 7	G	118	125	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	157	first strand
Strand 2	G	193	197	anti-parallel
Strand 3	G	185	189	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	79	82	anti-parallel
Strand 3	H	73	76	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	68	69	first strand
Strand 2	H	94	99	parallel
Strand 3	H	86	91	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	192	193	first strand
Strand 2	H	168	176	anti-parallel
Strand 3	H	182	185	anti-parallel
Strand 4	H	134	136	parallel
Strand 5	H	123	127	anti-parallel
Strand 6	H	111	120	anti-parallel
Strand 7	H	168	176	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	201	first strand
Strand 2	H	230	235	anti-parallel
Strand 3	H	221	225	anti-parallel
Strand 4	H	214	217	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	11	first strand
Strand 2	I	62	68	anti-parallel
Strand 3	I	106	111	anti-parallel
Strand 4	I	29	36	parallel
Strand 5	I	21	26	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	19	first strand
Strand 2	I	54	58	anti-parallel
Strand 3	I	41	45	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	188	190	first strand
Strand 2	I	150	159	anti-parallel
Strand 3	I	138	146	anti-parallel
Strand 4	I	229	236	anti-parallel
Strand 5	I	253	254	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	188	190	first strand
Strand 2	I	150	159	anti-parallel
Strand 3	I	202	206	anti-parallel
Strand 4	I	243	246	parallel
Strand 5	I	229	236	anti-parallel
Strand 6	I	253	254	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	257	258	first strand
Strand 2	I	266	271	anti-parallel
Strand 3	I	274	276	anti-parallel
Strand 4	I	283	284	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	18	28	anti-parallel
Strand 3	J	31	41	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	78	79	first strand
Strand 2	J	84	90	anti-parallel
Strand 3	J	110	114	parallel
Strand 4	J	144	148	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	78	79	first strand
Strand 2	J	84	90	anti-parallel
Strand 3	J	190	195	anti-parallel
Strand 4	J	214	216	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	299	302	first strand
Strand 2	J	287	290	anti-parallel
Strand 3	J	274	280	anti-parallel
Strand 4	J	315	320	anti-parallel
Strand 5	J	390	397	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	402	407	first strand
Strand 2	J	420	426	anti-parallel
Strand 3	J	434	438	anti-parallel
Strand 4	J	464	473	parallel
Strand 5	J	447	455	anti-parallel
Strand 6	J	402	407	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	532	533	first strand
Strand 2	J	636	652	parallel
Strand 3	J	620	630	anti-parallel
Strand 4	J	564	571	anti-parallel
Strand 5	J	552	558	anti-parallel
Strand 6	J	539	542	anti-parallel
Strand 7	J	636	652	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	594	595	first strand
Strand 2	J	600	601	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	701	705	first strand
Strand 2	J	712	717	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	751	754	first strand
Strand 2	J	817	820	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	937	940	first strand
Strand 2	J	925	929	anti-parallel
Strand 3	J	914	921	anti-parallel
Strand 4	J	978	983	anti-parallel
Strand 5	J	998	1000	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	952	954	first strand
Strand 2	J	959	962	anti-parallel
Strand 3	J	971	974	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	214	216	first strand
Strand 2	K	262	266	parallel
Strand 3	K	250	257	anti-parallel
Strand 4	K	234	242	anti-parallel
Strand 5	K	287	290	parallel
Strand 6	K	311	313	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	400	401	first strand
Strand 2	K	415	416	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	583	585	first strand
Strand 2	K	591	593	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C0W

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C0W