Analysis of interatomic Contacts of Structural Units in PDB entry:
5C0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C0Y entry

There are 4 chains in PDB entry 5C0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 127THR 515
B
 LYS 127THR 515
D
 U 1 U 15
C
 U 1 U 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5C0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
131 136Right-handed 310
Helix 2
AA2
A
161 167Right-handed alpha
Helix 3
AA3
A
183 190Right-handed alpha
Helix 4
AA4
A
207 211Right-handed 310
Helix 5
AA5
A
218 230Right-handed alpha
Helix 6
AA6
A
273 276Right-handed 310
Helix 7
AA7
A
277 282Right-handed alpha
Helix 8
AA8
A
295 305Right-handed alpha
Helix 9
AA9
A
314 322Right-handed alpha
Helix 10
AB1
A
327 336Right-handed alpha
Helix 11
AB2
A
355 368Right-handed alpha
Helix 12
AB3
A
368 383Right-handed alpha
Helix 13
AB4
A
385 399Right-handed alpha
Helix 14
AB5
A
403 407Right-handed 310
Helix 15
AB6
A
424 432Right-handed alpha
Helix 16
AB7
A
435 437Right-handed 310
Helix 17
AB8
A
438 457Right-handed alpha
Helix 18
AB9
A
459 464Right-handed alpha
Helix 19
AC1
A
465 476Right-handed alpha
Helix 20
AC2
A
479 485Right-handed alpha
Helix 21
AC3
A
491 497Right-handed alpha
Helix 22
AC4
A
497 515Right-handed alpha
Helix 23
AC5
B
131 136Right-handed 310
Helix 24
AC6
B
161 166Right-handed alpha
Helix 25
AC7
B
183 190Right-handed alpha
Helix 26
AC8
B
207 211Right-handed 310
Helix 27
AC9
B
218 230Right-handed alpha
Helix 28
AD1
B
273 276Right-handed 310
Helix 29
AD2
B
277 282Right-handed alpha
Helix 30
AD3
B
293 305Right-handed alpha
Helix 31
AD4
B
314 322Right-handed alpha
Helix 32
AD5
B
327 336Right-handed alpha
Helix 33
AD6
B
342 347Right-handed 310
Helix 34
AD7
B
355 368Right-handed alpha
Helix 35
AD8
B
368 383Right-handed alpha
Helix 36
AD9
B
385 399Right-handed alpha
Helix 37
AE1
B
403 407Right-handed 310
Helix 38
AE2
B
423 432Right-handed alpha
Helix 39
AE3
B
435 437Right-handed 310
Helix 40
AE4
B
438 457Right-handed alpha
Helix 41
AE5
B
459 464Right-handed alpha
Helix 42
AE6
B
465 476Right-handed alpha
Helix 43
AE7
B
479 485Right-handed alpha
Helix 44
AE8
B
491 497Right-handed alpha
Helix 45
AE9
B
497 515Right-handed alpha
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There are 4 sheets in PDB entry 5C0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
262 266parallel
Strand 3
A
250 257anti-parallel
Strand 4
A
234 242anti-parallel
Strand 5
A
287 290parallel
Strand 6
A
311 313parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
415 416parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 216first strand
Strand 2
B
262 266parallel
Strand 3
B
250 257anti-parallel
Strand 4
B
234 242anti-parallel
Strand 5
B
287 290parallel
Strand 6
B
311 313parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 401first strand
Strand 2
B
415 416parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il