Analysis of interatomic Contacts of Structural Units in PDB entry:
5C13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C13 entry

There are 12 chains in PDB entry 5C13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 856CYS 914
P
 ALA 1THR 3
P
 GLN 5THR 6
C
 MET 856CYS 914
D
 ALA 1THR 3
D
 GLN 5THR 6
E
 MET 856CYS 914
F
 ALA 1THR 3
F
 GLN 5THR 6
G
 MET 856CYS 914
H
 ALA 1THR 3
H
 GLN 5THR 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5C13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
895 898Right-handed 310
Helix 2
AA2
C
895 898Right-handed 310
Helix 3
AA3
E
895 898Right-handed 310
Helix 4
AA4
G
895 898Right-handed 310
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There are 6 sheets in PDB entry 5C13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
866 868first strand
Strand 2
A
858 860anti-parallel
Strand 3
F
3 5anti-parallel
Strand 4
E
882 884anti-parallel
Strand 5
E
891 893anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
891 893first strand
Strand 2
A
882 884anti-parallel
Strand 3
P
3 4anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
866 869first strand
Strand 2
C
857 860anti-parallel
Strand 3
H
3 5anti-parallel
Strand 4
G
882 884anti-parallel
Strand 5
G
891 893anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
891 893first strand
Strand 2
C
882 884anti-parallel
Strand 3
D
3 4anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
857 860first strand
Strand 2
E
866 869anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
858 860first strand
Strand 2
G
866 868anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il