Analysis of interatomic Contacts of Structural Units in PDB entry:
5C16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C16 entry

There are 3 chains in PDB entry 5C16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 98	ASN 605
B	ALA 98	ASN 605
C	ALA 98	ARG 381

There are100 helices in PDB entry 5C16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	195	205	Right-handed alpha
Helix 2	AA2	A	206	209	Right-handed 310
Helix 3	AA3	A	213	218	Right-handed 310
Helix 4	AA4	A	225	229	Right-handed 310
Helix 5	AA5	A	231	239	Right-handed alpha
Helix 6	AA6	A	272	282	Right-handed alpha
Helix 7	AA7	A	283	287	Right-handed 310
Helix 8	AA8	A	317	330	Right-handed alpha
Helix 9	AA9	A	344	354	Right-handed alpha
Helix 10	AB1	A	376	392	Right-handed alpha
Helix 11	AB2	A	396	398	Right-handed 310
Helix 12	AB3	A	399	408	Right-handed alpha
Helix 13	AB4	A	408	429	Right-handed alpha
Helix 14	AB5	A	443	457	Right-handed alpha
Helix 15	AB6	A	458	461	Right-handed 310
Helix 16	AB7	A	462	474	Right-handed alpha
Helix 17	AB8	A	480	486	Right-handed alpha
Helix 18	AB9	A	499	515	Right-handed alpha
Helix 19	AC1	A	522	536	Right-handed alpha
Helix 20	AC2	A	545	552	Right-handed alpha
Helix 21	AC3	A	553	558	Right-handed alpha
Helix 22	AC4	A	560	568	Right-handed alpha
Helix 23	AC5	A	569	573	Right-handed 310
Helix 24	AC6	A	590	594	Right-handed 310
Helix 25	AC7	A	597	602	Right-handed alpha
Helix 26	AC8	B	195	205	Right-handed alpha
Helix 27	AC9	B	206	209	Right-handed 310
Helix 28	AD1	B	213	217	Right-handed 310
Helix 29	AD2	B	225	229	Right-handed 310
Helix 30	AD3	B	231	240	Right-handed alpha
Helix 31	AD4	B	272	283	Right-handed alpha
Helix 32	AD5	B	284	287	Right-handed 310
Helix 33	AD6	B	317	331	Right-handed alpha
Helix 34	AD7	B	344	354	Right-handed alpha
Helix 35	AD8	B	376	392	Right-handed alpha
Helix 36	AD9	B	396	398	Right-handed 310
Helix 37	AE1	B	399	406	Right-handed alpha
Helix 38	AE2	B	408	429	Right-handed alpha
Helix 39	AE3	B	443	457	Right-handed alpha
Helix 40	AE4	B	458	461	Right-handed 310
Helix 41	AE5	B	462	474	Right-handed alpha
Helix 42	AE6	B	480	486	Right-handed alpha
Helix 43	AE7	B	499	515	Right-handed alpha
Helix 44	AE8	B	522	536	Right-handed alpha
Helix 45	AE9	B	545	552	Right-handed alpha
Helix 46	AF1	B	553	558	Right-handed alpha
Helix 47	AF2	B	560	567	Right-handed alpha
Helix 48	AF3	B	568	573	Right-handed 310
Helix 49	AF4	B	590	594	Right-handed 310
Helix 50	AF5	B	597	602	Right-handed alpha
Helix 51	AF6	C	195	205	Right-handed alpha
Helix 52	AF7	C	206	209	Right-handed 310
Helix 53	AF8	C	213	217	Right-handed 310
Helix 54	AF9	C	225	229	Right-handed 310
Helix 55	AG1	C	231	240	Right-handed alpha
Helix 56	AG2	C	272	283	Right-handed alpha
Helix 57	AG3	C	284	287	Right-handed 310
Helix 58	AG4	C	317	330	Right-handed alpha
Helix 59	AG5	C	344	353	Right-handed alpha
Helix 60	AG6	C	376	392	Right-handed alpha
Helix 61	AG7	C	396	398	Right-handed 310
Helix 62	AG8	C	399	408	Right-handed alpha
Helix 63	AG9	C	408	429	Right-handed alpha
Helix 64	AH1	C	443	457	Right-handed alpha
Helix 65	AH2	C	458	461	Right-handed 310
Helix 66	AH3	C	462	474	Right-handed alpha
Helix 67	AH4	C	480	486	Right-handed alpha
Helix 68	AH5	C	499	515	Right-handed alpha
Helix 69	AH6	C	522	536	Right-handed alpha
Helix 70	AH7	C	545	552	Right-handed alpha
Helix 71	AH8	C	553	558	Right-handed alpha
Helix 72	AH9	C	560	567	Right-handed alpha
Helix 73	AI1	C	568	573	Right-handed 310
Helix 74	AI2	C	590	594	Right-handed 310
Helix 75	AI3	C	597	602	Right-handed alpha
Helix 76	AI4	D	195	205	Right-handed alpha
Helix 77	AI5	D	206	209	Right-handed 310
Helix 78	AI6	D	213	217	Right-handed 310
Helix 79	AI7	D	225	229	Right-handed 310
Helix 80	AI8	D	231	239	Right-handed alpha
Helix 81	AI9	D	272	283	Right-handed alpha
Helix 82	AJ1	D	284	287	Right-handed 310
Helix 83	AJ2	D	317	330	Right-handed alpha
Helix 84	AJ3	D	344	353	Right-handed alpha
Helix 85	AJ4	D	376	392	Right-handed alpha
Helix 86	AJ5	D	396	398	Right-handed 310
Helix 87	AJ6	D	399	408	Right-handed alpha
Helix 88	AJ7	D	408	429	Right-handed alpha
Helix 89	AJ8	D	443	457	Right-handed alpha
Helix 90	AJ9	D	458	461	Right-handed 310
Helix 91	AK1	D	462	474	Right-handed alpha
Helix 92	AK2	D	480	486	Right-handed alpha
Helix 93	AK3	D	499	515	Right-handed alpha
Helix 94	AK4	D	522	536	Right-handed alpha
Helix 95	AK5	D	545	552	Right-handed alpha
Helix 96	AK6	D	553	558	Right-handed alpha
Helix 97	AK7	D	560	567	Right-handed alpha
Helix 98	AK8	D	568	573	Right-handed 310
Helix 99	AK9	D	590	594	Right-handed 310
Helix 100	AL1	D	597	602	Right-handed alpha

There are 12 sheets in PDB entry 5C16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	150	first strand
Strand 2	A	133	138	anti-parallel
Strand 3	A	122	130	anti-parallel
Strand 4	A	106	116	anti-parallel
Strand 5	A	181	185	anti-parallel
Strand 6	A	172	176	anti-parallel
Strand 7	A	154	158	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	249	first strand
Strand 2	A	265	268	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	294	first strand
Strand 2	A	301	305	anti-parallel
Strand 3	A	434	437	parallel
Strand 4	A	337	343	parallel
Strand 5	A	367	374	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	150	first strand
Strand 2	B	133	138	anti-parallel
Strand 3	B	124	130	anti-parallel
Strand 4	B	106	115	anti-parallel
Strand 5	B	181	185	anti-parallel
Strand 6	B	172	176	anti-parallel
Strand 7	B	154	158	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	249	first strand
Strand 2	B	265	268	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	294	first strand
Strand 2	B	301	305	anti-parallel
Strand 3	B	434	437	parallel
Strand 4	B	337	343	parallel
Strand 5	B	367	374	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	133	138	anti-parallel
Strand 3	C	124	130	anti-parallel
Strand 4	C	106	115	anti-parallel
Strand 5	C	181	185	anti-parallel
Strand 6	C	172	176	anti-parallel
Strand 7	C	154	158	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	249	first strand
Strand 2	C	265	268	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	294	first strand
Strand 2	C	301	305	anti-parallel
Strand 3	C	434	437	parallel
Strand 4	C	337	341	parallel
Strand 5	C	367	371	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	150	first strand
Strand 2	D	133	138	anti-parallel
Strand 3	D	123	130	anti-parallel
Strand 4	D	106	115	anti-parallel
Strand 5	D	180	185	anti-parallel
Strand 6	D	172	176	anti-parallel
Strand 7	D	154	158	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	249	first strand
Strand 2	D	265	268	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	294	first strand
Strand 2	D	301	305	anti-parallel
Strand 3	D	434	437	parallel
Strand 4	D	337	341	parallel
Strand 5	D	367	371	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C16

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C16