Analysis of interatomic Contacts of Structural Units in PDB entry:
5C17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C17 entry

There is 1 chain in PDB entry 5C17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4SER 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5C17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
21 35Right-handed alpha
Helix 3
AA3
A
40 49Right-handed alpha
Helix 4
AA4
A
51 65Right-handed alpha
Helix 5
AA5
A
102 114Right-handed alpha
Helix 6
AA6
A
163 168Right-handed 310
Helix 7
AA7
A
173 184Right-handed alpha
Helix 8
AA8
A
193 208Right-handed alpha
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There are 2 sheets in PDB entry 5C17. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
76 79anti-parallel
Strand 3
A
82 83anti-parallel
Strand 4
A
96 100anti-parallel
Strand 5
A
89 93anti-parallel
Strand 6
A
117 122anti-parallel
Strand 7
A
129 135anti-parallel
Strand 8
A
138 143anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
148 151anti-parallel
Strand 3
A
190 192anti-parallel
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