Analysis of interatomic Contacts of Structural Units in PDB entry:
5C1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C1M entry

There are 3 chains in PDB entry 5C1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 52LEU 56
A
 PRO 58PHE 347
B
 GLN 3ALA 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5C1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 96Right-handed alpha
Helix 2
AA2
A
101 119Right-handed alpha
Helix 3
AA3
A
120 130Right-handed alpha
Helix 4
AA4
A
135 171Right-handed alpha
Helix 5
AA5
A
171 179Right-handed alpha
Helix 6
AA6
A
180 205Right-handed alpha
Helix 7
AA7
A
224 241Right-handed alpha
Helix 8
AA8
A
241 262Right-handed alpha
Helix 9
AA9
A
267 306Right-handed alpha
Helix 10
AB1
A
311 337Right-handed alpha
Helix 11
AB2
A
340 347Right-handed alpha
Helix 12
AB3
B
87 91Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5C1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 211first strand
Strand 2
A
214 219anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
20 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
118 122parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
32 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
118 122parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
113 114anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il