Analysis of interatomic Contacts of Structural Units in PDB entry:
5C1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C1T entry

There are 2 chains in PDB entry 5C1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 21HIS 335
B
 ILE 21ARG 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5C1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 39Right-handed alpha
Helix 2
AA2
A
81 85Right-handed 310
Helix 3
AA3
A
97 105Right-handed alpha
Helix 4
AA4
A
108 116Right-handed alpha
Helix 5
AA5
A
131 135Right-handed 310
Helix 6
AA6
A
138 148Right-handed alpha
Helix 7
AA7
A
163 177Right-handed alpha
Helix 8
AA8
A
191 197Right-handed alpha
Helix 9
AA9
A
232 240Right-handed alpha
Helix 10
AB1
A
262 269Right-handed alpha
Helix 11
AB2
A
296 301Right-handed alpha
Helix 12
AB3
A
302 304Right-handed 310
Helix 13
AB4
A
313 332Right-handed alpha
Helix 14
AB5
B
32 39Right-handed alpha
Helix 15
AB6
B
80 85Right-handed alpha
Helix 16
AB7
B
98 103Right-handed alpha
Helix 17
AB8
B
107 115Right-handed alpha
Helix 18
AB9
B
138 148Right-handed alpha
Helix 19
AC1
B
163 178Right-handed alpha
Helix 20
AC2
B
196 201Right-handed 310
Helix 21
AC3
B
232 242Right-handed alpha
Helix 22
AC4
B
244 249Right-handed alpha
Helix 23
AC5
B
266 272Right-handed alpha
Helix 24
AC6
B
292 298Right-handed alpha
Helix 25
AC7
B
315 317Right-handed 310
Helix 26
AC8
B
318 331Right-handed alpha
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There are 5 sheets in PDB entry 5C1T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
22 26parallel
Strand 3
A
88 88parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
22 26parallel
Strand 3
A
91 93parallel
Strand 4
A
123 126parallel
Strand 5
A
152 155parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
226 231anti-parallel
Strand 3
A
180 185parallel
Strand 4
A
249 254parallel
Strand 5
A
278 282parallel
Strand 6
A
306 308parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
22 27parallel
Strand 3
B
88 94parallel
Strand 4
B
121 127parallel
Strand 5
B
152 155parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 219first strand
Strand 2
B
224 229anti-parallel
Strand 3
B
179 185parallel
Strand 4
B
251 255parallel
Strand 5
B
279 281parallel
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