Analysis of interatomic Contacts of Structural Units in PDB entry:
5C1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C1V entry

There are 2 chains in PDB entry 5C1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 24PRO 340
B
 PHE 23PRO 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5C1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 35Right-handed alpha
Helix 2
AA2
A
42 51Right-handed alpha
Helix 3
AA3
A
57 74Right-handed alpha
Helix 4
AA4
A
94 106Right-handed alpha
Helix 5
AA5
A
125 140Right-handed alpha
Helix 6
AA6
A
153 160Right-handed alpha
Helix 7
AA7
A
161 170Right-handed alpha
Helix 8
AA8
A
171 184Right-handed alpha
Helix 9
AA9
A
208 214Right-handed alpha
Helix 10
AB1
A
225 233Right-handed alpha
Helix 11
AB2
A
261 272Right-handed alpha
Helix 12
AB3
A
310 314Right-handed 310
Helix 13
AB4
B
30 35Right-handed alpha
Helix 14
AB5
B
42 51Right-handed alpha
Helix 15
AB6
B
57 75Right-handed alpha
Helix 16
AB7
B
94 106Right-handed alpha
Helix 17
AB8
B
125 140Right-handed alpha
Helix 18
AB9
B
153 160Right-handed alpha
Helix 19
AC1
B
161 170Right-handed alpha
Helix 20
AC2
B
171 184Right-handed alpha
Helix 21
AC3
B
208 215Right-handed alpha
Helix 22
AC4
B
225 233Right-handed alpha
Helix 23
AC5
B
261 272Right-handed alpha
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There are 8 sheets in PDB entry 5C1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
55 56parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
188 191parallel
Strand 3
A
195 198anti-parallel
Strand 4
A
276 279parallel
Strand 5
A
302 305parallel
Strand 6
A
288 290anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
113 115parallel
Strand 3
A
85 88parallel
Strand 4
A
319 325anti-parallel
Strand 5
A
328 334anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
258 260parallel
Strand 3
A
248 250anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
55 56parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
188 191parallel
Strand 3
B
195 198anti-parallel
Strand 4
B
276 279parallel
Strand 5
B
302 304parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
113 115parallel
Strand 3
B
85 88parallel
Strand 4
B
312 314anti-parallel
Strand 5
B
321 322anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
B
258 260parallel
Strand 3
B
248 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il