Analysis of interatomic Contacts of Structural Units in PDB entry:
5C22


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C22 entry

There are 4 chains in PDB entry 5C22 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 96PRO 361
B
 ALA 95PRO 361
C
 SER 96VAL 360
D
 SER 96PRO 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5C22. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
131 163Right-handed alpha
Helix 2
AA2
A
173 177Right-handed 310
Helix 3
AA3
A
180 242Right-handed alpha
Helix 4
AA4
A
250 326Right-handed alpha
Helix 5
AA5
B
131 163Right-handed alpha
Helix 6
AA6
B
173 177Right-handed 310
Helix 7
AA7
B
180 245Right-handed alpha
Helix 8
AA8
B
250 326Right-handed alpha
Helix 9
AA9
C
131 163Right-handed alpha
Helix 10
AB1
C
173 177Right-handed 310
Helix 11
AB2
C
180 245Right-handed alpha
Helix 12
AB3
C
250 326Right-handed alpha
Helix 13
AB4
C
342 346Right-handed 310
Helix 14
AB5
D
131 163Right-handed alpha
Helix 15
AB6
D
173 177Right-handed 310
Helix 16
AB7
D
180 245Right-handed alpha
Helix 17
AB8
D
250 326Right-handed alpha
Helix 18
AB9
D
342 346Right-handed 310
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There are 8 sheets in PDB entry 5C22. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
357 360anti-parallel
Strand 3
A
336 339anti-parallel
Strand 4
A
117 118anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
123 129anti-parallel
Strand 3
A
105 110anti-parallel
Strand 4
A
349 350anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
357 360anti-parallel
Strand 3
B
336 339anti-parallel
Strand 4
B
117 118anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 331first strand
Strand 2
B
123 129anti-parallel
Strand 3
B
105 110anti-parallel
Strand 4
B
349 350anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 99first strand
Strand 2
C
357 360anti-parallel
Strand 3
C
337 339anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 329first strand
Strand 2
C
126 129anti-parallel
Strand 3
C
105 109anti-parallel
Strand 4
C
349 350anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 99first strand
Strand 2
D
357 360anti-parallel
Strand 3
D
336 339anti-parallel
Strand 4
D
117 118anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
328 331first strand
Strand 2
D
123 129anti-parallel
Strand 3
D
105 110anti-parallel
Strand 4
D
349 350anti-parallel
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