Analysis of interatomic Contacts of Structural Units in PDB entry:
5C2C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C2C entry

There are 4 chains in PDB entry 5C2C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3ILE 190
A
 ASN 192LYS 459
B
 GLN 3ILE 190
B
 ASN 192ASP 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 77 helices in PDB entry 5C2C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
13 21Right-handed alpha
Helix 3
AA3
A
37 49Right-handed alpha
Helix 4
AA4
A
62 68Right-handed 310
Helix 5
AA5
A
88 90Right-handed 310
Helix 6
AA6
A
100 110Right-handed alpha
Helix 7
AA7
A
111 114Right-handed 310
Helix 8
AA8
A
129 135Right-handed alpha
Helix 9
AA9
A
142 151Right-handed alpha
Helix 10
AB1
A
172 185Right-handed alpha
Helix 11
AB2
A
203 223Right-handed alpha
Helix 12
AB3
A
236 252Right-handed alpha
Helix 13
AB4
A
253 256Right-handed 310
Helix 14
AB5
A
264 268Right-handed alpha
Helix 15
AB6
A
268 279Right-handed alpha
Helix 16
AB7
A
291 296Right-handed alpha
Helix 17
AB8
A
304 316Right-handed alpha
Helix 18
AB9
A
333 335Right-handed 310
Helix 19
AC1
A
336 345Right-handed alpha
Helix 20
AC2
A
375 384Right-handed alpha
Helix 21
AC3
A
392 398Right-handed alpha
Helix 22
AC4
A
402 419Right-handed alpha
Helix 23
AC5
A
422 428Right-handed alpha
Helix 24
AC6
A
430 440Right-handed alpha
Helix 25
AC7
A
440 448Right-handed alpha
Helix 26
AC8
A
450 456Right-handed alpha
Helix 27
AC9
B
4 8Right-handed alpha
Helix 28
AD1
B
13 21Right-handed alpha
Helix 29
AD2
B
37 49Right-handed alpha
Helix 30
AD3
B
63 68Right-handed 310
Helix 31
AD4
B
88 90Right-handed 310
Helix 32
AD5
B
100 110Right-handed alpha
Helix 33
AD6
B
111 114Right-handed 310
Helix 34
AD7
B
129 135Right-handed alpha
Helix 35
AD8
B
142 151Right-handed alpha
Helix 36
AD9
B
172 185Right-handed alpha
Helix 37
AE1
B
203 223Right-handed alpha
Helix 38
AE2
B
236 252Right-handed alpha
Helix 39
AE3
B
253 256Right-handed 310
Helix 40
AE4
B
264 268Right-handed alpha
Helix 41
AE5
B
268 279Right-handed alpha
Helix 42
AE6
B
291 296Right-handed alpha
Helix 43
AE7
B
304 316Right-handed alpha
Helix 44
AE8
B
333 335Right-handed 310
Helix 45
AE9
B
336 345Right-handed alpha
Helix 46
AF1
B
375 384Right-handed alpha
Helix 47
AF2
B
392 398Right-handed alpha
Helix 48
AF3
B
402 419Right-handed alpha
Helix 49
AF4
B
422 428Right-handed alpha
Helix 50
AF5
B
430 440Right-handed alpha
Helix 51
AF6
B
440 447Right-handed alpha
Helix 52
AF7
C
3 8Right-handed alpha
Helix 53
AF8
C
13 21Right-handed alpha
Helix 54
AF9
C
37 49Right-handed alpha
Helix 55
AG1
C
63 68Right-handed 310
Helix 56
AG2
C
88 90Right-handed 310
Helix 57
AG3
C
100 110Right-handed alpha
Helix 58
AG4
C
111 114Right-handed 310
Helix 59
AG5
C
129 135Right-handed alpha
Helix 60
AG6
C
142 151Right-handed alpha
Helix 61
AG7
C
172 185Right-handed alpha
Helix 62
AG8
C
203 223Right-handed alpha
Helix 63
AG9
C
236 252Right-handed alpha
Helix 64
AH1
C
253 256Right-handed 310
Helix 65
AH2
C
264 268Right-handed alpha
Helix 66
AH3
C
268 279Right-handed alpha
Helix 67
AH4
C
291 296Right-handed alpha
Helix 68
AH5
C
304 316Right-handed alpha
Helix 69
AH6
C
333 335Right-handed 310
Helix 70
AH7
C
336 345Right-handed alpha
Helix 71
AH8
C
375 384Right-handed alpha
Helix 72
AH9
C
392 398Right-handed alpha
Helix 73
AI1
C
402 420Right-handed alpha
Helix 74
AI2
C
422 428Right-handed alpha
Helix 75
AI3
C
430 440Right-handed alpha
Helix 76
AI4
C
440 448Right-handed alpha
Helix 77
AI5
C
450 455Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 5C2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 75first strand
Strand 2
A
80 86anti-parallel
Strand 3
A
23 32anti-parallel
Strand 4
A
118 127anti-parallel
Strand 5
A
302 303parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
189 191parallel
Strand 3
A
227 231parallel
Strand 4
A
258 263parallel
Strand 5
A
284 287parallel
Strand 6
A
319 321parallel
Strand 7
A
364 367parallel
Strand 8
A
389 391parallel
Strand 9
A
160 164parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
354 356anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 75first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
23 32anti-parallel
Strand 4
B
118 127anti-parallel
Strand 5
B
302 303parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 164first strand
Strand 2
B
189 191parallel
Strand 3
B
227 231parallel
Strand 4
B
258 263parallel
Strand 5
B
284 287parallel
Strand 6
B
319 321parallel
Strand 7
B
364 367parallel
Strand 8
B
389 391parallel
Strand 9
B
160 164parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 349first strand
Strand 2
B
354 356anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 75first strand
Strand 2
C
80 86anti-parallel
Strand 3
C
23 32anti-parallel
Strand 4
C
118 127anti-parallel
Strand 5
C
302 303parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 164first strand
Strand 2
C
189 191parallel
Strand 3
C
227 231parallel
Strand 4
C
258 263parallel
Strand 5
C
284 287parallel
Strand 6
C
319 321parallel
Strand 7
C
364 367parallel
Strand 8
C
389 391parallel
Strand 9
C
160 164parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
347 349first strand
Strand 2
C
354 356anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il