Analysis of interatomic Contacts of Structural Units in PDB entry:
5C2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C2D entry

There is 1 chain in PDB entry 5C2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 213PRO 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5C2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
217 225Right-handed alpha
Helix 2
AA2
A
226 232Right-handed alpha
Helix 3
AA3
A
273 288Right-handed alpha
Helix 4
AA4
A
299 303Right-handed 310
Helix 5
AA5
A
304 312Right-handed alpha
Helix 6
AA6
A
352 357Right-handed alpha
Helix 7
AA7
A
359 382Right-handed alpha
Helix 8
AA8
A
386 390Right-handed 310
Helix 9
AA9
A
394 399Right-handed alpha
Helix 10
AB1
A
399 411Right-handed alpha
Helix 11
AB2
A
427 436Right-handed alpha
Helix 12
AB3
A
440 449Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5C2D.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 322first strand
Strand 2
A
292 296parallel
Strand 3
A
239 244parallel
Strand 4
A
253 259anti-parallel
Strand 5
A
262 269anti-parallel
Strand 6
A
392 393parallel
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