Analysis of interatomic Contacts of Structural Units in PDB entry:
5C2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C2J entry

There are 2 chains in PDB entry 5C2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 346GLU 546
B
 MET 1LEU 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5C2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
350 355Right-handed 310
Helix 2
AA2
A
363 376Right-handed alpha
Helix 3
AA3
A
389 402Right-handed alpha
Helix 4
AA4
A
415 428Right-handed alpha
Helix 5
AA5
A
438 447Right-handed alpha
Helix 6
AA6
A
450 463Right-handed alpha
Helix 7
AA7
A
466 485Right-handed alpha
Helix 8
AA8
A
486 490Right-handed 310
Helix 9
AA9
A
492 505Right-handed alpha
Helix 10
AB1
A
513 534Right-handed alpha
Helix 11
AB2
A
535 541Right-handed alpha
Helix 12
AB3
A
542 544Right-handed 310
Helix 13
AB4
B
15 26Right-handed alpha
Helix 14
AB5
B
61 65Right-handed 310
Helix 15
AB6
B
67 72Right-handed 310
Helix 16
AB7
B
86 96Right-handed alpha
Helix 17
AB8
B
96 105Right-handed alpha
Helix 18
AB9
B
116 121Right-handed 310
Helix 19
AC1
B
122 132Right-handed alpha
Helix 20
AC2
B
138 149Right-handed alpha
Helix 21
AC3
B
164 178Right-handed alpha
Helix 22
AC4
B
182 187Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 5C2J.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 46first strand
Strand 2
B
49 58anti-parallel
Strand 3
B
3 9parallel
Strand 4
B
77 83parallel
Strand 5
B
110 115parallel
Strand 6
B
154 156parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il