Analysis of interatomic Contacts of Structural Units in PDB entry:
5C2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C2M entry

There is 1 chain in PDB entry 5C2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 13GLN 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5C2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 42Right-handed alpha
Helix 2
AA2
A
49 53Right-handed 310
Helix 3
AA3
A
82 90Right-handed alpha
Helix 4
AA4
A
132 137Right-handed alpha
Helix 5
AA5
A
144 148Right-handed 310
Helix 6
AA6
A
179 184Right-handed alpha
Helix 7
AA7
A
191 195Right-handed 310
Helix 8
AA8
A
227 229Right-handed 310
Helix 9
AA9
A
236 238Right-handed 310
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There are 5 sheets in PDB entry 5C2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
25 28anti-parallel
Strand 3
A
16 20anti-parallel
Strand 4
A
240 244anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
71 75anti-parallel
Strand 4
A
91 95anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
112 116anti-parallel
Strand 3
A
119 123anti-parallel
Strand 4
A
138 141anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
159 163anti-parallel
Strand 3
A
166 170anti-parallel
Strand 4
A
185 186anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 200first strand
Strand 2
A
206 209anti-parallel
Strand 3
A
213 216anti-parallel
Strand 4
A
231 233anti-parallel
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