Analysis of interatomic Contacts of Structural Units in PDB entry:
5C2V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C2V entry

There are 6 chains in PDB entry 5C2V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 28	VAL 808
B	GLY 35	ASP 386
C	GLY 40	LEU 353
D	GLU 28	VAL 808
E	GLY 35	ASP 386
F	GLY 40	LEU 353

There are 50 helices in PDB entry 5C2V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	53	Right-handed alpha
Helix 2	AA2	A	72	76	Right-handed 310
Helix 3	AA3	A	222	229	Right-handed alpha
Helix 4	AA4	A	349	353	Right-handed 310
Helix 5	AA5	A	515	519	Right-handed 310
Helix 6	AA6	A	601	607	Right-handed 310
Helix 7	AA7	A	664	668	Right-handed 310
Helix 8	AA8	A	676	685	Right-handed alpha
Helix 9	AA9	A	713	720	Right-handed alpha
Helix 10	AB1	A	743	750	Right-handed alpha
Helix 11	AB2	A	777	790	Right-handed alpha
Helix 12	AB3	B	254	258	Right-handed 310
Helix 13	AB4	B	317	326	Right-handed alpha
Helix 14	AB5	B	328	336	Right-handed alpha
Helix 15	AB6	B	341	345	Right-handed alpha
Helix 16	AB7	C	64	70	Right-handed alpha
Helix 17	AB8	C	81	91	Right-handed alpha
Helix 18	AB9	C	101	105	Right-handed 310
Helix 19	AC1	C	161	166	Right-handed alpha
Helix 20	AC2	C	167	172	Right-handed alpha
Helix 21	AC3	C	179	192	Right-handed alpha
Helix 22	AC4	C	208	219	Right-handed alpha
Helix 23	AC5	C	267	274	Right-handed alpha
Helix 24	AC6	C	317	322	Right-handed 310
Helix 25	AC7	C	339	352	Right-handed alpha
Helix 26	AC8	D	44	53	Right-handed alpha
Helix 27	AC9	D	72	76	Right-handed 310
Helix 28	AD1	D	222	229	Right-handed alpha
Helix 29	AD2	D	349	353	Right-handed 310
Helix 30	AD3	D	515	519	Right-handed 310
Helix 31	AD4	D	602	606	Right-handed 310
Helix 32	AD5	D	676	685	Right-handed alpha
Helix 33	AD6	D	713	720	Right-handed alpha
Helix 34	AD7	D	743	750	Right-handed alpha
Helix 35	AD8	D	777	790	Right-handed alpha
Helix 36	AD9	E	254	258	Right-handed 310
Helix 37	AE1	E	317	326	Right-handed alpha
Helix 38	AE2	E	328	336	Right-handed alpha
Helix 39	AE3	E	341	345	Right-handed alpha
Helix 40	AE4	F	64	70	Right-handed alpha
Helix 41	AE5	F	78	80	Right-handed 310
Helix 42	AE6	F	81	91	Right-handed alpha
Helix 43	AE7	F	101	107	Right-handed alpha
Helix 44	AE8	F	161	166	Right-handed alpha
Helix 45	AE9	F	167	172	Right-handed alpha
Helix 46	AF1	F	179	192	Right-handed alpha
Helix 47	AF2	F	208	219	Right-handed alpha
Helix 48	AF3	F	267	273	Right-handed alpha
Helix 49	AF4	F	317	323	Right-handed alpha
Helix 50	AF5	F	339	351	Right-handed alpha

There are 43 sheets in PDB entry 5C2V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	85	90	anti-parallel
Strand 3	A	58	65	anti-parallel
Strand 4	A	407	414	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	111	first strand
Strand 2	A	117	124	anti-parallel
Strand 3	A	127	136	anti-parallel
Strand 4	A	143	144	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	158	first strand
Strand 2	A	192	199	anti-parallel
Strand 3	A	213	218	anti-parallel
Strand 4	A	243	247	anti-parallel
Strand 5	A	236	238	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	173	first strand
Strand 2	A	181	188	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	260	first strand
Strand 2	A	266	272	anti-parallel
Strand 3	A	283	289	anti-parallel
Strand 4	A	297	300	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	318	first strand
Strand 2	A	324	330	anti-parallel
Strand 3	A	339	344	anti-parallel
Strand 4	A	354	357	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	369	first strand
Strand 2	A	375	380	anti-parallel
Strand 3	A	385	391	anti-parallel
Strand 4	A	396	402	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	430	first strand
Strand 2	A	433	435	anti-parallel
Strand 3	A	442	444	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	549	first strand
Strand 2	A	455	460	anti-parallel
Strand 3	A	580	583	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	537	first strand
Strand 2	A	488	494	anti-parallel
Strand 3	A	554	559	anti-parallel
Strand 4	A	565	568	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	626	first strand
Strand 2	A	632	636	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	706	first strand
Strand 2	A	709	710	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	54	first strand
Strand 2	B	60	65	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	80	86	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	96	first strand
Strand 2	B	102	107	anti-parallel
Strand 3	B	112	117	anti-parallel
Strand 4	B	122	128	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	138	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	156	161	anti-parallel
Strand 4	B	166	171	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	189	193	anti-parallel
Strand 3	B	202	208	anti-parallel
Strand 4	B	213	220	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	231	first strand
Strand 2	B	237	245	anti-parallel
Strand 3	B	260	268	anti-parallel
Strand 4	B	275	279	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	295	first strand
Strand 2	B	301	306	anti-parallel
Strand 3	B	311	316	anti-parallel
Strand 4	B	346	351	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	361	first strand
Strand 2	B	367	372	anti-parallel
Strand 3	B	377	382	anti-parallel
Strand 4	C	43	49	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	128	129	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	246	first strand
Strand 2	C	295	296	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	85	90	anti-parallel
Strand 3	D	58	64	anti-parallel
Strand 4	D	408	414	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	111	first strand
Strand 2	D	117	124	anti-parallel
Strand 3	D	130	136	anti-parallel
Strand 4	D	143	144	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	158	first strand
Strand 2	D	192	198	anti-parallel
Strand 3	D	213	218	anti-parallel
Strand 4	D	243	247	anti-parallel
Strand 5	D	236	238	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	173	first strand
Strand 2	D	181	189	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	260	first strand
Strand 2	D	266	272	anti-parallel
Strand 3	D	283	289	anti-parallel
Strand 4	D	297	300	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	318	first strand
Strand 2	D	324	330	anti-parallel
Strand 3	D	339	344	anti-parallel
Strand 4	D	354	355	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	369	first strand
Strand 2	D	375	380	anti-parallel
Strand 3	D	386	391	anti-parallel
Strand 4	D	396	402	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	428	430	first strand
Strand 2	D	433	435	anti-parallel
Strand 3	D	442	444	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	544	549	first strand
Strand 2	D	455	460	anti-parallel
Strand 3	D	580	583	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	537	first strand
Strand 2	D	488	494	anti-parallel
Strand 3	D	554	559	anti-parallel
Strand 4	D	565	568	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	623	626	first strand
Strand 2	D	632	636	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	641	642	first strand
Strand 2	D	660	661	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	705	706	first strand
Strand 2	D	709	710	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	54	first strand
Strand 2	E	60	65	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	81	86	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	96	first strand
Strand 2	E	102	107	anti-parallel
Strand 3	E	112	117	anti-parallel
Strand 4	E	122	128	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	138	first strand
Strand 2	E	144	149	anti-parallel
Strand 3	E	156	161	anti-parallel
Strand 4	E	166	171	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	182	183	first strand
Strand 2	E	189	194	anti-parallel
Strand 3	E	202	208	anti-parallel
Strand 4	E	213	220	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	224	231	first strand
Strand 2	E	237	245	anti-parallel
Strand 3	E	260	268	anti-parallel
Strand 4	E	275	279	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	295	first strand
Strand 2	E	301	306	anti-parallel
Strand 3	E	311	316	anti-parallel
Strand 4	E	346	351	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	356	361	first strand
Strand 2	E	367	372	anti-parallel
Strand 3	E	377	382	anti-parallel
Strand 4	F	43	48	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	118	first strand
Strand 2	F	127	129	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	245	246	first strand
Strand 2	F	295	296	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C2V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C2V