Analysis of interatomic Contacts of Structural Units in PDB entry:
5C2Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C2Y entry

There are 2 chains in PDB entry 5C2Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1SER 176
B
 SER -1ALA 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 5C2Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 12Right-handed alpha
Helix 2
AA2
A
13 16Right-handed 310
Helix 3
AA3
A
22 38Right-handed alpha
Helix 4
AA4
A
44 52Right-handed alpha
Helix 5
AA5
A
53 55Right-handed 310
Helix 6
AA6
A
56 70Right-handed alpha
Helix 7
AA7
A
90 100Right-handed alpha
Helix 8
AA8
A
104 109Right-handed alpha
Helix 9
AA9
A
113 125Right-handed alpha
Helix 10
AB1
A
131 135Right-handed 310
Helix 11
AB2
A
145 153Right-handed alpha
Helix 12
AB3
A
157 166Right-handed alpha
Helix 13
AB4
A
167 176Right-handed alpha
Helix 14
AB5
B
3 12Right-handed alpha
Helix 15
AB6
B
13 16Right-handed 310
Helix 16
AB7
B
22 38Right-handed alpha
Helix 17
AB8
B
44 52Right-handed alpha
Helix 18
AB9
B
53 55Right-handed 310
Helix 19
AC1
B
56 70Right-handed alpha
Helix 20
AC2
B
92 103Right-handed alpha
Helix 21
AC3
B
105 110Right-handed 310
Helix 22
AC4
B
113 126Right-handed alpha
Helix 23
AC5
B
131 135Right-handed 310
Helix 24
AC6
B
145 153Right-handed alpha
Helix 25
AC7
B
157 164Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5C2Y
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il