Analysis of interatomic Contacts of Structural Units in PDB entry:
5C2Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C2Z entry

There are 2 chains in PDB entry 5C2Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 31GLU 278
B
 ILE 32GLN 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5C2Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 48Right-handed alpha
Helix 2
AA2
A
66 68Right-handed 310
Helix 3
AA3
A
95 99Right-handed alpha
Helix 4
AA4
A
100 102Right-handed 310
Helix 5
AA5
A
104 106Right-handed 310
Helix 6
AA6
A
159 164Right-handed alpha
Helix 7
AA7
A
215 219Right-handed 310
Helix 8
AA8
A
266 277Right-handed alpha
Helix 9
AA9
B
35 46Right-handed alpha
Helix 10
AB1
B
66 68Right-handed 310
Helix 11
AB2
B
94 99Right-handed alpha
Helix 12
AB3
B
100 102Right-handed 310
Helix 13
AB4
B
104 106Right-handed 310
Helix 14
AB5
B
159 164Right-handed alpha
Helix 15
AB6
B
215 219Right-handed 310
Helix 16
AB7
B
266 276Right-handed alpha
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There are 6 sheets in PDB entry 5C2Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
196 204anti-parallel
Strand 3
A
209 211anti-parallel
Strand 4
A
243 248anti-parallel
Strand 5
A
230 238anti-parallel
Strand 6
A
222 224anti-parallel
Strand 7
A
180 185anti-parallel
Strand 8
A
196 204anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 75first strand
Strand 2
A
79 85anti-parallel
Strand 3
A
90 94anti-parallel
Strand 4
A
146 151anti-parallel
Strand 5
A
130 136anti-parallel
Strand 6
A
108 112anti-parallel
Strand 7
A
70 75anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
264 265anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
196 204anti-parallel
Strand 3
B
209 210anti-parallel
Strand 4
B
243 248anti-parallel
Strand 5
B
230 238anti-parallel
Strand 6
B
222 224anti-parallel
Strand 7
B
180 185anti-parallel
Strand 8
B
196 204anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 75first strand
Strand 2
B
79 85anti-parallel
Strand 3
B
90 93anti-parallel
Strand 4
B
147 151anti-parallel
Strand 5
B
130 136anti-parallel
Strand 6
B
108 112anti-parallel
Strand 7
B
70 75anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
264 265anti-parallel
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