Analysis of interatomic Contacts of Structural Units in PDB entry:
5C33


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C33 entry

There are 4 chains in PDB entry 5C33 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 652CYS 757
A
 LEU 759LYS 841
B
 VAL 652CYS 757
B
 LEU 759TYR 840
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5C33. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
701 703Right-handed 310
Helix 2
AA2
A
707 709Right-handed 310
Helix 3
AA3
A
823 826Right-handed 310
Helix 4
AA4
B
701 703Right-handed 310
Helix 5
AA5
B
707 709Right-handed 310
Helix 6
AA6
B
823 826Right-handed 310
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There are 7 sheets in PDB entry 5C33. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 740first strand
Strand 2
A
731 734anti-parallel
Strand 3
A
724 727anti-parallel
Strand 4
A
693 699anti-parallel
Strand 5
A
788 794anti-parallel
Strand 6
A
653 657anti-parallel
Strand 7
A
833 839anti-parallel
Strand 8
B
833 839anti-parallel
Strand 9
B
653 657anti-parallel
Strand 10
B
788 794anti-parallel
Strand 11
B
693 699anti-parallel
Strand 12
B
724 727anti-parallel
Strand 13
B
731 734anti-parallel
Strand 14
B
737 740anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
773 774first strand
Strand 2
A
765 770anti-parallel
Strand 3
A
754 760anti-parallel
Strand 4
A
672 681anti-parallel
Strand 5
A
799 803anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
773 774first strand
Strand 2
A
765 770anti-parallel
Strand 3
A
754 760anti-parallel
Strand 4
A
672 681anti-parallel
Strand 5
A
820 821parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 706first strand
Strand 2
A
710 712anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
773 774first strand
Strand 2
B
765 770anti-parallel
Strand 3
B
754 760anti-parallel
Strand 4
B
672 681anti-parallel
Strand 5
B
799 803anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
779 780first strand
Strand 2
B
765 770anti-parallel
Strand 3
B
754 760anti-parallel
Strand 4
B
672 681anti-parallel
Strand 5
B
820 821parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
704 706first strand
Strand 2
B
710 712anti-parallel
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