Analysis of interatomic Contacts of Structural Units in PDB entry:
5C3C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C3C entry

There are 2 chains in PDB entry 5C3C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 11PHE 267
B
 LYS 12PHE 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5C3C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 32Right-handed alpha
Helix 2
AA2
A
45 57Right-handed alpha
Helix 3
AA3
A
72 77Right-handed alpha
Helix 4
AA4
A
91 99Right-handed alpha
Helix 5
AA5
A
116 123Right-handed 310
Helix 6
AA6
A
162 167Right-handed alpha
Helix 7
AA7
A
178 191Right-handed alpha
Helix 8
AA8
A
193 208Right-handed alpha
Helix 9
AA9
A
220 232Right-handed alpha
Helix 10
AB1
A
236 245Right-handed alpha
Helix 11
AB2
A
252 267Right-handed alpha
Helix 12
AB3
B
21 32Right-handed alpha
Helix 13
AB4
B
45 57Right-handed alpha
Helix 14
AB5
B
71 76Right-handed alpha
Helix 15
AB6
B
91 100Right-handed alpha
Helix 16
AB7
B
107 111Right-handed 310
Helix 17
AB8
B
112 117Right-handed alpha
Helix 18
AB9
B
119 123Right-handed 310
Helix 19
AC1
B
162 167Right-handed alpha
Helix 20
AC2
B
178 191Right-handed alpha
Helix 21
AC3
B
193 209Right-handed alpha
Helix 22
AC4
B
220 232Right-handed alpha
Helix 23
AC5
B
236 245Right-handed alpha
Helix 24
AC6
B
246 250Right-handed 310
Helix 25
AC7
B
252 267Right-handed alpha
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There are 4 sheets in PDB entry 5C3C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
102 106parallel
Strand 3
A
145 150parallel
Strand 4
A
36 39parallel
Strand 5
A
170 173parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
137 139anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
102 106parallel
Strand 3
B
145 150parallel
Strand 4
B
36 39parallel
Strand 5
B
170 173parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
137 139anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il