Analysis of interatomic Contacts of Structural Units in PDB entry:
5C3L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C3L entry

There are 5 chains in PDB entry 5C3L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 317ASN 450
B
 GLN 283ALA 406
C
 LEU 358THR 485
D
 GLN 1SER 112
H
 UNK 107UNK 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5C3L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
333 343Right-handed alpha
Helix 2
AA2
A
356 426Right-handed alpha
Helix 3
AA3
A
432 449Right-handed alpha
Helix 4
AA4
B
285 292Right-handed 310
Helix 5
AA5
B
293 309Right-handed alpha
Helix 6
AA6
B
311 365Right-handed alpha
Helix 7
AA7
B
366 373Right-handed 310
Helix 8
AA8
B
374 404Right-handed alpha
Helix 9
AA9
C
361 441Right-handed alpha
Helix 10
AB1
C
450 484Right-handed alpha
Helix 11
AB2
D
28 32Right-handed 310
Helix 12
AB3
D
74 76Right-handed 310
Helix 13
AB4
D
87 91Right-handed 310
Helix 14
AB5
H
111 119Right-handed alpha
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There are 3 sheets in PDB entry 5C3L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
107 110parallel
Strand 3
D
92 98anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
46 51anti-parallel
Strand 6
D
59 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
107 110parallel
Strand 3
D
92 98anti-parallel
Strand 4
D
101 102anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il