Analysis of interatomic Contacts of Structural Units in PDB entry:
5C3O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C3O entry

There is 1 chain in PDB entry 5C3O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1PRO 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5C3O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 24Right-handed alpha
Helix 2
AA2
A
25 43Right-handed alpha
Helix 3
AA3
A
54 71Right-handed alpha
Helix 4
AA4
A
72 78Right-handed alpha
Helix 5
AA5
A
139 143Right-handed 310
Helix 6
AA6
A
144 172Right-handed alpha
Helix 7
AA7
A
178 184Right-handed alpha
Helix 8
AA8
A
255 262Right-handed alpha
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There are 3 sheets in PDB entry 5C3O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
11 13anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
45 49parallel
Strand 3
A
249 254anti-parallel
Strand 4
A
220 225anti-parallel
Strand 5
A
286 293anti-parallel
Strand 6
A
187 194anti-parallel
Strand 7
A
119 123anti-parallel
Strand 8
A
89 91anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
231 234anti-parallel
Strand 3
A
271 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il