Analysis of interatomic Contacts of Structural Units in PDB entry:
5C3Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C3Q entry

There are 4 chains in PDB entry 5C3Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	TYR 333
B	MET 1	THR 332
C	MET 1	THR 332
D	LYS 3	GLU 311

There are 47 helices in PDB entry 5C3Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	24	Right-handed alpha
Helix 2	AA2	A	25	43	Right-handed alpha
Helix 3	AA3	A	54	70	Right-handed alpha
Helix 4	AA4	A	72	78	Right-handed alpha
Helix 5	AA5	A	103	113	Right-handed alpha
Helix 6	AA6	A	139	143	Right-handed 310
Helix 7	AA7	A	144	172	Right-handed alpha
Helix 8	AA8	A	178	183	Right-handed alpha
Helix 9	AA9	A	200	205	Right-handed alpha
Helix 10	AB1	A	255	262	Right-handed alpha
Helix 11	AB2	A	310	314	Right-handed 310
Helix 12	AB3	A	321	331	Right-handed alpha
Helix 13	AB4	B	18	23	Right-handed alpha
Helix 14	AB5	B	25	43	Right-handed alpha
Helix 15	AB6	B	54	70	Right-handed alpha
Helix 16	AB7	B	72	78	Right-handed alpha
Helix 17	AB8	B	139	143	Right-handed 310
Helix 18	AB9	B	144	172	Right-handed alpha
Helix 19	AC1	B	178	183	Right-handed alpha
Helix 20	AC2	B	199	205	Right-handed alpha
Helix 21	AC3	B	255	262	Right-handed alpha
Helix 22	AC4	B	310	314	Right-handed 310
Helix 23	AC5	B	321	331	Right-handed alpha
Helix 24	AC6	C	18	23	Right-handed alpha
Helix 25	AC7	C	25	43	Right-handed alpha
Helix 26	AC8	C	54	70	Right-handed alpha
Helix 27	AC9	C	72	79	Right-handed alpha
Helix 28	AD1	C	139	143	Right-handed 310
Helix 29	AD2	C	144	172	Right-handed alpha
Helix 30	AD3	C	178	183	Right-handed alpha
Helix 31	AD4	C	199	205	Right-handed alpha
Helix 32	AD5	C	255	262	Right-handed alpha
Helix 33	AD6	C	310	314	Right-handed 310
Helix 34	AD7	C	321	332	Right-handed alpha
Helix 35	AD8	D	18	23	Right-handed alpha
Helix 36	AD9	D	25	43	Right-handed alpha
Helix 37	AE1	D	54	70	Right-handed alpha
Helix 38	AE2	D	72	78	Right-handed alpha
Helix 39	AE3	D	103	105	Right-handed 310
Helix 40	AE4	D	106	113	Right-handed alpha
Helix 41	AE5	D	139	143	Right-handed 310
Helix 42	AE6	D	144	172	Right-handed alpha
Helix 43	AE7	D	178	183	Right-handed alpha
Helix 44	AE8	D	200	205	Right-handed alpha
Helix 45	AE9	D	255	262	Right-handed alpha
Helix 46	AF1	D	310	314	Right-handed 310
Helix 47	AF2	D	321	331	Right-handed alpha

There are 20 sheets in PDB entry 5C3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	11	13	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	45	49	parallel
Strand 3	A	249	254	anti-parallel
Strand 4	A	220	225	anti-parallel
Strand 5	A	286	293	anti-parallel
Strand 6	A	188	194	anti-parallel
Strand 7	A	119	123	anti-parallel
Strand 8	A	89	91	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	198	first strand
Strand 2	A	282	283	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	214	first strand
Strand 2	A	271	273	anti-parallel
Strand 3	A	231	234	anti-parallel
Strand 4	A	240	242	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	A	319	320	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	11	13	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	45	49	parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	220	225	anti-parallel
Strand 5	B	286	292	anti-parallel
Strand 6	B	188	194	anti-parallel
Strand 7	B	119	123	anti-parallel
Strand 8	B	89	91	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	198	first strand
Strand 2	B	282	283	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	214	first strand
Strand 2	B	271	273	anti-parallel
Strand 3	B	231	234	anti-parallel
Strand 4	B	240	242	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	B	319	320	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	11	13	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	C	45	49	parallel
Strand 3	C	249	254	anti-parallel
Strand 4	C	220	225	anti-parallel
Strand 5	C	286	292	anti-parallel
Strand 6	C	188	194	anti-parallel
Strand 7	C	119	123	anti-parallel
Strand 8	C	89	91	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	198	first strand
Strand 2	C	282	283	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	214	first strand
Strand 2	C	271	273	anti-parallel
Strand 3	C	231	234	anti-parallel
Strand 4	C	240	242	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	301	first strand
Strand 2	C	319	320	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	11	13	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	45	49	parallel
Strand 3	D	249	254	anti-parallel
Strand 4	D	220	225	anti-parallel
Strand 5	D	286	293	anti-parallel
Strand 6	D	188	194	anti-parallel
Strand 7	D	119	123	anti-parallel
Strand 8	D	89	91	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	198	first strand
Strand 2	D	282	283	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	214	first strand
Strand 2	D	271	273	anti-parallel
Strand 3	D	231	234	anti-parallel
Strand 4	D	240	242	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	301	first strand
Strand 2	D	319	320	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C3Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C3Q