Analysis of interatomic Contacts of Structural Units in PDB entry:
5C41

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C41 entry

There are 4 chains in PDB entry 5C41 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 14	HIS 330
B	VAL 15	GLU 324
C	GLU 14	HIS 330
D	GLU 14	HIS 329

There are 60 helices in PDB entry 5C41. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	65	Right-handed alpha
Helix 2	AA2	A	78	91	Right-handed alpha
Helix 3	AA3	A	125	131	Right-handed 310
Helix 4	AA4	A	132	139	Right-handed alpha
Helix 5	AA5	A	139	145	Right-handed alpha
Helix 6	AA6	A	156	170	Right-handed alpha
Helix 7	AA7	A	187	192	Right-handed alpha
Helix 8	AA8	A	200	208	Right-handed alpha
Helix 9	AA9	A	213	227	Right-handed alpha
Helix 10	AB1	A	237	239	Right-handed 310
Helix 11	AB2	A	266	282	Right-handed alpha
Helix 12	AB3	A	286	303	Right-handed alpha
Helix 13	AB4	A	306	311	Right-handed 310
Helix 14	AB5	A	313	317	Right-handed 310
Helix 15	AB6	A	318	323	Right-handed 310
Helix 16	AB7	B	53	65	Right-handed alpha
Helix 17	AB8	B	78	91	Right-handed alpha
Helix 18	AB9	B	125	131	Right-handed 310
Helix 19	AC1	B	132	139	Right-handed alpha
Helix 20	AC2	B	139	145	Right-handed alpha
Helix 21	AC3	B	156	170	Right-handed alpha
Helix 22	AC4	B	187	192	Right-handed alpha
Helix 23	AC5	B	200	208	Right-handed alpha
Helix 24	AC6	B	213	227	Right-handed alpha
Helix 25	AC7	B	237	239	Right-handed 310
Helix 26	AC8	B	266	282	Right-handed alpha
Helix 27	AC9	B	286	303	Right-handed alpha
Helix 28	AD1	B	307	311	Right-handed 310
Helix 29	AD2	B	313	317	Right-handed 310
Helix 30	AD3	B	318	323	Right-handed 310
Helix 31	AD4	C	53	65	Right-handed alpha
Helix 32	AD5	C	78	91	Right-handed alpha
Helix 33	AD6	C	125	131	Right-handed 310
Helix 34	AD7	C	132	139	Right-handed alpha
Helix 35	AD8	C	139	145	Right-handed alpha
Helix 36	AD9	C	156	170	Right-handed alpha
Helix 37	AE1	C	187	192	Right-handed alpha
Helix 38	AE2	C	200	208	Right-handed alpha
Helix 39	AE3	C	213	227	Right-handed alpha
Helix 40	AE4	C	237	239	Right-handed 310
Helix 41	AE5	C	266	282	Right-handed alpha
Helix 42	AE6	C	286	303	Right-handed alpha
Helix 43	AE7	C	306	311	Right-handed 310
Helix 44	AE8	C	313	317	Right-handed 310
Helix 45	AE9	C	318	323	Right-handed 310
Helix 46	AF1	D	53	65	Right-handed alpha
Helix 47	AF2	D	78	91	Right-handed alpha
Helix 48	AF3	D	125	131	Right-handed 310
Helix 49	AF4	D	132	139	Right-handed alpha
Helix 50	AF5	D	139	145	Right-handed alpha
Helix 51	AF6	D	156	170	Right-handed alpha
Helix 52	AF7	D	187	192	Right-handed alpha
Helix 53	AF8	D	200	208	Right-handed alpha
Helix 54	AF9	D	213	227	Right-handed alpha
Helix 55	AG1	D	237	239	Right-handed 310
Helix 56	AG2	D	266	282	Right-handed alpha
Helix 57	AG3	D	286	303	Right-handed alpha
Helix 58	AG4	D	306	311	Right-handed 310
Helix 59	AG5	D	313	317	Right-handed 310
Helix 60	AG6	D	318	323	Right-handed 310

There are 8 sheets in PDB entry 5C41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	69	76	parallel
Strand 3	A	18	21	parallel
Strand 4	A	148	151	parallel
Strand 5	A	173	176	parallel
Strand 6	A	195	199	parallel
Strand 7	A	231	235	parallel
Strand 8	A	241	245	anti-parallel
Strand 9	A	252	254	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	52	first strand
Strand 2	A	25	31	anti-parallel
Strand 3	A	107	113	parallel
Strand 4	A	119	124	anti-parallel
Strand 5	B	41	43	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	B	120	124	parallel
Strand 3	B	107	114	anti-parallel
Strand 4	B	25	32	parallel
Strand 5	B	46	52	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	69	76	parallel
Strand 3	B	18	21	parallel
Strand 4	B	148	151	parallel
Strand 5	B	173	176	parallel
Strand 6	B	195	199	parallel
Strand 7	B	231	235	parallel
Strand 8	B	241	245	anti-parallel
Strand 9	B	252	254	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	69	76	parallel
Strand 3	C	18	21	parallel
Strand 4	C	148	151	parallel
Strand 5	C	173	176	parallel
Strand 6	C	195	199	parallel
Strand 7	C	231	235	parallel
Strand 8	C	241	245	anti-parallel
Strand 9	C	252	254	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	52	first strand
Strand 2	C	25	31	anti-parallel
Strand 3	C	107	113	parallel
Strand 4	C	119	124	anti-parallel
Strand 5	D	41	43	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	D	119	124	parallel
Strand 3	D	107	113	anti-parallel
Strand 4	D	25	31	parallel
Strand 5	D	46	52	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	69	76	parallel
Strand 3	D	18	21	parallel
Strand 4	D	148	151	parallel
Strand 5	D	173	176	parallel
Strand 6	D	195	199	parallel
Strand 7	D	231	235	parallel
Strand 8	D	241	245	anti-parallel
Strand 9	D	252	254	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C41

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C41