Analysis of interatomic Contacts of Structural Units in PDB entry:
5C46


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C46 entry

There are 2 chains in PDB entry 5C46 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 SER 128MET 782
F
 ASP 6GLN 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 5C46. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
128 135Right-handed alpha
Helix 2
AA2
E
140 151Right-handed alpha
Helix 3
AA3
E
153 164Right-handed alpha
Helix 4
AA4
E
165 167Right-handed 310
Helix 5
AA5
E
168 174Right-handed alpha
Helix 6
AA6
E
175 186Right-handed alpha
Helix 7
AA7
E
187 205Right-handed alpha
Helix 8
AA8
E
205 219Right-handed alpha
Helix 9
AA9
E
233 243Right-handed alpha
Helix 10
AB1
E
307 324Right-handed alpha
Helix 11
AB2
E
325 327Right-handed 310
Helix 12
AB3
E
329 342Right-handed alpha
Helix 13
AB4
E
343 348Right-handed 310
Helix 14
AB5
E
367 371Right-handed 310
Helix 15
AB6
E
521 532Right-handed alpha
Helix 16
AB7
E
554 574Right-handed alpha
Helix 17
AB8
E
604 611Right-handed alpha
Helix 18
AB9
E
614 623Right-handed alpha
Helix 19
AC1
E
628 653Right-handed alpha
Helix 20
AC2
E
696 703Right-handed alpha
Helix 21
AC3
E
708 727Right-handed alpha
Helix 22
AC4
E
728 741Right-handed alpha
Helix 23
AC5
E
745 749Right-handed 310
Helix 24
AC6
E
752 760Right-handed alpha
Helix 25
AC7
E
766 782Right-handed alpha
Helix 26
AC8
F
23 33Right-handed alpha
Helix 27
AC9
F
70 72Right-handed 310
Helix 28
AD1
F
73 78Right-handed alpha
Helix 29
AD2
F
95 101Right-handed alpha
Helix 30
AD3
F
101 113Right-handed alpha
Helix 31
AD4
F
128 132Right-handed 310
Helix 32
AD5
F
135 146Right-handed alpha
Helix 33
AD6
F
160 179Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5C46. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
361 365first strand
Strand 2
E
382 390anti-parallel
Strand 3
E
372 373anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
361 365first strand
Strand 2
E
382 390anti-parallel
Strand 3
E
541 549anti-parallel
Strand 4
E
593 595anti-parallel
Strand 5
E
585 587anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
601 603first strand
Strand 2
E
662 665anti-parallel
Strand 3
E
670 672anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
46 55first strand
Strand 2
F
58 67anti-parallel
Strand 3
F
10 18parallel
Strand 4
F
86 92parallel
Strand 5
F
118 124parallel
Strand 6
F
149 152parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il