Analysis of interatomic Contacts of Structural Units in PDB entry:
5C4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C4J entry

There is 1 chain in PDB entry 5C4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	VAL 1291

There are121 helices in PDB entry 5C4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	95	104	Right-handed alpha
Helix 3	AA3	A	121	126	Right-handed alpha
Helix 4	AA4	A	131	145	Right-handed alpha
Helix 5	AA5	A	203	213	Right-handed alpha
Helix 6	AA6	A	218	222	Right-handed 310
Helix 7	AA7	A	230	234	Right-handed 310
Helix 8	AA8	A	243	247	Right-handed 310
Helix 9	AA9	A	262	278	Right-handed alpha
Helix 10	AB1	A	288	298	Right-handed alpha
Helix 11	AB2	A	300	305	Right-handed alpha
Helix 12	AB3	A	324	329	Right-handed alpha
Helix 13	AB4	A	369	373	Right-handed 310
Helix 14	AB5	A	384	394	Right-handed alpha
Helix 15	AB6	A	473	476	Right-handed 310
Helix 16	AB7	A	494	504	Right-handed alpha
Helix 17	AB8	A	508	512	Right-handed 310
Helix 18	AB9	A	525	535	Right-handed alpha
Helix 19	AC1	A	543	552	Right-handed alpha
Helix 20	AC2	A	574	579	Right-handed alpha
Helix 21	AC3	A	629	637	Right-handed alpha
Helix 22	AC4	A	638	661	Right-handed alpha
Helix 23	AC5	A	666	670	Right-handed 310
Helix 24	AC6	A	672	699	Right-handed alpha
Helix 25	AC7	A	709	730	Right-handed alpha
Helix 26	AC8	A	730	735	Right-handed alpha
Helix 27	AC9	A	741	750	Right-handed alpha
Helix 28	AD1	A	754	763	Right-handed alpha
Helix 29	AD2	A	793	798	Right-handed alpha
Helix 30	AD3	A	809	846	Right-handed alpha
Helix 31	AD4	A	867	871	Right-handed 310
Helix 32	AD5	A	889	898	Right-handed alpha
Helix 33	AD6	A	925	947	Right-handed alpha
Helix 34	AD7	A	959	971	Right-handed alpha
Helix 35	AD8	A	982	997	Right-handed alpha
Helix 36	AD9	A	1004	1026	Right-handed alpha
Helix 37	AE1	A	1029	1034	Right-handed alpha
Helix 38	AE2	A	1038	1057	Right-handed alpha
Helix 39	AE3	A	1063	1068	Right-handed alpha
Helix 40	AE4	A	1072	1078	Right-handed alpha
Helix 41	AE5	A	1079	1082	Right-handed 310
Helix 42	AE6	A	1089	1095	Right-handed alpha
Helix 43	AE7	A	1096	1107	Right-handed alpha
Helix 44	AE8	A	1127	1139	Right-handed alpha
Helix 45	AE9	A	1142	1145	Right-handed 310
Helix 46	AF1	A	1157	1161	Right-handed 310
Helix 47	AF2	A	1167	1173	Right-handed alpha
Helix 48	AF3	A	1198	1205	Right-handed alpha
Helix 49	AF4	A	1208	1220	Right-handed alpha
Helix 50	AF5	A	1257	1269	Right-handed alpha
Helix 51	AF6	A	1331	1339	Right-handed alpha
Helix 52	AF7	A	1340	1358	Right-handed alpha
Helix 53	AF8	A	1364	1366	Right-handed 310
Helix 54	AF9	A	1367	1377	Right-handed alpha
Helix 55	AG1	A	1395	1400	Right-handed alpha
Helix 56	AG2	A	1405	1415	Right-handed alpha
Helix 57	AG3	A	1423	1431	Right-handed alpha
Helix 58	AG4	A	1436	1441	Right-handed alpha
Helix 59	AG5	A	1447	1452	Right-handed alpha
Helix 60	AG6	B	26	41	Right-handed alpha
Helix 61	AG7	B	45	56	Right-handed alpha
Helix 62	AG8	B	58	66	Right-handed alpha
Helix 63	AG9	B	113	121	Right-handed alpha
Helix 64	AH1	B	179	184	Right-handed alpha
Helix 65	AH2	B	185	190	Right-handed alpha
Helix 66	AH3	B	191	193	Right-handed 310
Helix 67	AH4	B	282	290	Right-handed alpha
Helix 68	AH5	B	293	302	Right-handed alpha
Helix 69	AH6	B	308	321	Right-handed alpha
Helix 70	AH7	B	326	333	Right-handed alpha
Helix 71	AH8	B	350	358	Right-handed alpha
Helix 72	AH9	B	373	390	Right-handed alpha
Helix 73	AI1	B	400	402	Right-handed 310
Helix 74	AI2	B	408	434	Right-handed alpha
Helix 75	AI3	B	444	449	Right-handed alpha
Helix 76	AI4	B	449	464	Right-handed alpha
Helix 77	AI5	B	487	493	Right-handed alpha
Helix 78	AI6	B	515	519	Right-handed 310
Helix 79	AI7	B	551	560	Right-handed alpha
Helix 80	AI8	B	592	607	Right-handed alpha
Helix 81	AI9	B	654	668	Right-handed alpha
Helix 82	AJ1	B	744	749	Right-handed 310
Helix 83	AJ2	B	763	774	Right-handed alpha
Helix 84	AJ3	B	783	787	Right-handed 310
Helix 85	AJ4	B	808	813	Right-handed alpha
Helix 86	AJ5	B	842	849	Right-handed alpha
Helix 87	AJ6	B	889	893	Right-handed 310
Helix 88	AJ7	B	1015	1021	Right-handed alpha
Helix 89	AJ8	B	1022	1038	Right-handed alpha
Helix 90	AJ9	B	1051	1061	Right-handed alpha
Helix 91	AK1	B	1098	1102	Right-handed 310
Helix 92	AK2	B	1131	1141	Right-handed alpha
Helix 93	AK3	B	1145	1151	Right-handed alpha
Helix 94	AK4	B	1197	1202	Right-handed alpha
Helix 95	AK5	B	1202	1211	Right-handed alpha
Helix 96	AK6	C	26	39	Right-handed alpha
Helix 97	AK7	C	59	69	Right-handed alpha
Helix 98	AK8	C	114	118	Right-handed 310
Helix 99	AK9	C	167	171	Right-handed 310
Helix 100	AL1	C	196	201	Right-handed alpha
Helix 101	AL2	C	204	208	Right-handed 310
Helix 102	AL3	C	239	268	Right-handed alpha
Helix 103	AL4	E	5	28	Right-handed alpha
Helix 104	AL5	E	31	36	Right-handed alpha
Helix 105	AL6	E	38	47	Right-handed alpha
Helix 106	AL7	E	65	72	Right-handed alpha
Helix 107	AL8	E	89	104	Right-handed alpha
Helix 108	AL9	E	117	123	Right-handed alpha
Helix 109	AM1	E	137	141	Right-handed alpha
Helix 110	AM2	E	157	163	Right-handed alpha
Helix 111	AM3	E	182	189	Right-handed alpha
Helix 112	AM4	F	86	103	Right-handed alpha
Helix 113	AM5	F	116	127	Right-handed alpha
Helix 114	AM6	H	130	134	Right-handed 310
Helix 115	AM7	J	16	28	Right-handed alpha
Helix 116	AM8	J	31	36	Right-handed alpha
Helix 117	AM9	J	43	52	Right-handed alpha
Helix 118	AN1	J	56	62	Right-handed alpha
Helix 119	AN2	K	6	10	Right-handed 310
Helix 120	AN3	K	39	52	Right-handed alpha
Helix 121	AN4	K	82	112	Right-handed alpha

There are 42 sheets in PDB entry 5C4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	20	anti-parallel
Strand 3	B	1213	1217	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	181	184	anti-parallel
Strand 3	A	199	202	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	B	1129	1130	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	363	365	parallel
Strand 3	A	468	471	anti-parallel
Strand 4	A	348	356	parallel
Strand 5	A	486	487	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	363	365	parallel
Strand 3	A	468	471	anti-parallel
Strand 4	A	348	356	parallel
Strand 5	B	1104	1106	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	402	406	anti-parallel
Strand 4	A	412	414	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	445	first strand
Strand 2	A	455	457	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	542	first strand
Strand 2	A	571	573	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	589	first strand
Strand 2	A	605	607	anti-parallel
Strand 3	A	612	615	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	856	857	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	882	first strand
Strand 2	A	953	957	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1283	1287	first strand
Strand 2	A	1303	1307	anti-parallel
Strand 3	A	1116	1119	anti-parallel
Strand 4	A	1328	1329	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1224	1228	first strand
Strand 2	A	1236	1242	anti-parallel
Strand 3	A	1195	1197	anti-parallel
Strand 4	A	1147	1152	anti-parallel
Strand 5	I	44	45	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1290	1292	first strand
Strand 2	A	1298	1300	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1442	1445	first strand
Strand 2	F	132	137	anti-parallel
Strand 3	F	143	147	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	73	first strand
Strand 2	B	85	92	anti-parallel
Strand 3	B	132	139	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	110	111	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	168	171	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	209	211	anti-parallel
Strand 3	B	481	482	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	218	first strand
Strand 2	B	404	407	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	227	first strand
Strand 2	B	234	242	anti-parallel
Strand 3	B	252	259	anti-parallel
Strand 4	B	269	272	anti-parallel
Strand 5	B	280	281	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	641	anti-parallel
Strand 3	B	690	694	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	651	first strand
Strand 2	B	633	641	anti-parallel
Strand 3	B	740	741	anti-parallel
Strand 4	B	703	704	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	565	first strand
Strand 2	B	586	590	anti-parallel
Strand 3	B	578	582	anti-parallel
Strand 4	B	623	627	parallel
Strand 5	B	614	618	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	793	796	first strand
Strand 2	B	853	856	anti-parallel

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There are 9 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	820	822	first strand
Strand 2	B	1091	1094	anti-parallel
Strand 3	B	979	982	anti-parallel
Strand 4	B	988	990	anti-parallel
Strand 5	B	838	841	parallel
Strand 6	B	1010	1012	anti-parallel
Strand 7	B	825	827	parallel
Strand 8	B	1085	1088	anti-parallel
Strand 9	B	1069	1070	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	862	first strand
Strand 2	B	962	969	anti-parallel
Strand 3	B	948	956	anti-parallel
Strand 4	L	56	57	anti-parallel
Strand 5	L	30	31	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	910	912	first strand
Strand 2	B	939	940	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1001	1002	first strand
Strand 2	B	1072	1073	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1163	first strand
Strand 2	B	1191	1195	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	13	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	228	234	anti-parallel
Strand 4	C	173	180	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	96	100	anti-parallel
Strand 4	C	119	120	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	45	54	anti-parallel
Strand 4	L	65	68	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	129	132	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	112	first strand
Strand 2	C	146	147	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	62	first strand
Strand 2	E	78	82	anti-parallel
Strand 3	E	107	112	parallel
Strand 4	E	131	136	parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	156	first strand
Strand 2	E	195	200	anti-parallel
Strand 3	E	208	214	anti-parallel
Strand 4	E	177	178	parallel

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There are 9 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	16	first strand
Strand 2	H	23	30	anti-parallel
Strand 3	H	37	43	anti-parallel
Strand 4	H	121	125	anti-parallel
Strand 5	H	112	118	anti-parallel
Strand 6	H	97	106	anti-parallel
Strand 7	H	139	145	anti-parallel
Strand 8	H	54	58	anti-parallel
Strand 9	H	7	16	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	17	first strand
Strand 2	I	26	27	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	71	first strand
Strand 2	I	83	87	anti-parallel
Strand 3	I	99	103	anti-parallel
Strand 4	I	109	111	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	23	first strand
Strand 2	K	30	34	anti-parallel
Strand 3	K	71	77	anti-parallel
Strand 4	K	56	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C4J