Analysis of interatomic Contacts of Structural Units in PDB entry:
5C4N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C4N entry

There is 1 chain in PDB entry 5C4N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 1GLY 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5C4N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
10 24Right-handed alpha
Helix 2
AA2
D
51 64Right-handed alpha
Helix 3
AA3
D
76 91Right-handed alpha
Helix 4
AA4
D
115 123Right-handed alpha
Helix 5
AA5
D
138 145Right-handed 310
Helix 6
AA6
D
177 188Right-handed alpha
Helix 7
AA7
D
204 214Right-handed alpha
Helix 8
AA8
D
233 244Right-handed alpha
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There are 2 sheets in PDB entry 5C4N. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 47first strand
Strand 2
D
27 31parallel
Strand 3
D
4 7parallel
Strand 4
D
67 70parallel
Strand 5
D
93 96parallel
Strand 6
D
229 230parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
109 113first strand
Strand 2
D
216 220parallel
Strand 3
D
192 196parallel
Strand 4
D
129 133parallel
Strand 5
D
149 154parallel
Strand 6
D
167 171parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il