Analysis of interatomic Contacts of Structural Units in PDB entry:
5C4V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C4V entry

There are 6 chains in PDB entry 5C4V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 319	HIS 541
C	ALA 319	THR 542
E	ALA 319	THR 542
B	GLY 259	LYS 354
D	PHE 262	LYS 352
F	PHE 262	LYS 354

There are 33 helices in PDB entry 5C4V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	373	381	Right-handed alpha
Helix 2	AA2	A	411	418	Right-handed alpha
Helix 3	AA3	A	439	459	Right-handed alpha
Helix 4	AA4	A	492	497	Right-handed alpha
Helix 5	AA5	A	517	521	Right-handed 310
Helix 6	AA6	A	530	541	Right-handed alpha
Helix 7	AA7	C	373	381	Right-handed alpha
Helix 8	AA8	C	411	418	Right-handed alpha
Helix 9	AA9	C	439	453	Right-handed alpha
Helix 10	AB1	C	493	497	Right-handed alpha
Helix 11	AB2	C	517	521	Right-handed 310
Helix 12	AB3	C	530	542	Right-handed alpha
Helix 13	AB4	E	373	382	Right-handed alpha
Helix 14	AB5	E	411	418	Right-handed alpha
Helix 15	AB6	E	439	460	Right-handed alpha
Helix 16	AB7	E	493	498	Right-handed alpha
Helix 17	AB8	E	517	521	Right-handed 310
Helix 18	AB9	E	530	541	Right-handed alpha
Helix 19	AC1	B	278	281	Right-handed 310
Helix 20	AC2	B	299	304	Right-handed alpha
Helix 21	AC3	B	321	323	Right-handed 310
Helix 22	AC4	B	324	329	Right-handed alpha
Helix 23	AC5	B	340	353	Right-handed alpha
Helix 24	AC6	D	278	281	Right-handed 310
Helix 25	AC7	D	299	304	Right-handed alpha
Helix 26	AC8	D	321	323	Right-handed 310
Helix 27	AC9	D	324	329	Right-handed alpha
Helix 28	AD1	D	340	352	Right-handed alpha
Helix 29	AD2	F	278	281	Right-handed 310
Helix 30	AD3	F	299	304	Right-handed alpha
Helix 31	AD4	F	321	323	Right-handed 310
Helix 32	AD5	F	324	329	Right-handed alpha
Helix 33	AD6	F	340	353	Right-handed alpha

There are 12 sheets in PDB entry 5C4V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	322	330	anti-parallel
Strand 3	A	339	342	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	322	330	anti-parallel
Strand 3	A	524	529	anti-parallel
Strand 4	A	500	505	anti-parallel
Strand 5	A	407	410	anti-parallel
Strand 6	A	426	429	anti-parallel
Strand 7	B	315	318	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	363	first strand
Strand 2	A	347	351	parallel
Strand 3	A	387	392	anti-parallel
Strand 4	A	396	400	anti-parallel
Strand 5	A	434	438	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	334	first strand
Strand 2	C	322	330	anti-parallel
Strand 3	C	339	342	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	334	first strand
Strand 2	C	322	330	anti-parallel
Strand 3	C	524	529	anti-parallel
Strand 4	C	500	505	anti-parallel
Strand 5	C	407	410	anti-parallel
Strand 6	C	426	429	anti-parallel
Strand 7	D	315	318	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	363	first strand
Strand 2	C	347	351	parallel
Strand 3	C	387	392	anti-parallel
Strand 4	C	396	400	anti-parallel
Strand 5	C	434	438	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	333	334	first strand
Strand 2	E	322	330	anti-parallel
Strand 3	E	339	342	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	333	334	first strand
Strand 2	E	322	330	anti-parallel
Strand 3	E	524	529	anti-parallel
Strand 4	E	500	505	anti-parallel
Strand 5	E	407	410	anti-parallel
Strand 6	E	426	429	anti-parallel
Strand 7	F	315	318	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	361	363	first strand
Strand 2	E	347	351	parallel
Strand 3	E	387	392	anti-parallel
Strand 4	E	396	400	anti-parallel
Strand 5	E	434	438	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	289	291	anti-parallel
Strand 3	B	272	276	anti-parallel
Strand 4	B	262	266	anti-parallel
Strand 5	B	330	331	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	298	first strand
Strand 2	D	289	291	anti-parallel
Strand 3	D	272	276	anti-parallel
Strand 4	D	263	266	anti-parallel
Strand 5	D	330	331	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	297	298	first strand
Strand 2	F	289	291	anti-parallel
Strand 3	F	272	276	anti-parallel
Strand 4	F	263	266	anti-parallel
Strand 5	F	330	331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C4V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C4V