Analysis of interatomic Contacts of Structural Units in PDB entry:
5C59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C59 entry

There are 7 chains in PDB entry 5C59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 14	MSE 211
B	ASN 14	MSE 211
C	THR 15	MSE 211
D	ASN 14	MSE 211
E	ASN 14	MSE 211
F	ASN 14	MSE 211
G	ASN 14	MSE 211

There are 34 helices in PDB entry 5C59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	36	45	Right-handed alpha
Helix 3	AA3	A	79	84	Right-handed alpha
Helix 4	AA4	A	95	101	Right-handed alpha
Helix 5	AA5	A	109	117	Right-handed alpha
Helix 6	AA6	A	160	164	Right-handed alpha
Helix 7	AA7	A	185	202	Right-handed alpha
Helix 8	AA8	B	36	45	Right-handed alpha
Helix 9	AA9	B	79	84	Right-handed alpha
Helix 10	AB1	B	95	101	Right-handed alpha
Helix 11	AB2	B	109	117	Right-handed alpha
Helix 12	AB3	B	161	164	Right-handed 310
Helix 13	AB4	B	185	202	Right-handed alpha
Helix 14	AB5	C	36	45	Right-handed alpha
Helix 15	AB6	C	79	84	Right-handed alpha
Helix 16	AB7	C	95	101	Right-handed alpha
Helix 17	AB8	C	109	117	Right-handed alpha
Helix 18	AB9	C	187	202	Right-handed alpha
Helix 19	AC1	D	28	32	Right-handed 310
Helix 20	AC2	D	36	45	Right-handed alpha
Helix 21	AC3	D	79	84	Right-handed alpha
Helix 22	AC4	D	95	100	Right-handed alpha
Helix 23	AC5	D	109	114	Right-handed alpha
Helix 24	AC6	D	185	200	Right-handed alpha
Helix 25	AC7	E	79	84	Right-handed alpha
Helix 26	AC8	E	95	101	Right-handed alpha
Helix 27	AC9	F	36	45	Right-handed alpha
Helix 28	AD1	F	79	84	Right-handed alpha
Helix 29	AD2	F	95	101	Right-handed alpha
Helix 30	AD3	F	109	117	Right-handed alpha
Helix 31	AD4	G	37	45	Right-handed alpha
Helix 32	AD5	G	79	84	Right-handed alpha
Helix 33	AD6	G	95	101	Right-handed alpha
Helix 34	AD7	G	185	202	Right-handed alpha

There are 16 sheets in PDB entry 5C59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	133	140	anti-parallel
Strand 3	A	105	108	parallel
Strand 4	A	155	159	anti-parallel
Strand 5	A	67	76	parallel
Strand 6	A	49	64	anti-parallel
Strand 7	A	172	180	anti-parallel
Strand 8	A	15	20	anti-parallel
Strand 9	A	206	210	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	133	140	anti-parallel
Strand 3	A	127	130	anti-parallel
Strand 4	A	49	64	anti-parallel
Strand 5	A	172	180	anti-parallel
Strand 6	A	15	20	anti-parallel
Strand 7	A	206	210	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	133	140	anti-parallel
Strand 3	B	105	108	parallel
Strand 4	B	155	159	anti-parallel
Strand 5	B	67	76	parallel
Strand 6	B	49	64	anti-parallel
Strand 7	B	172	180	anti-parallel
Strand 8	B	15	20	anti-parallel
Strand 9	B	206	210	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	133	140	anti-parallel
Strand 3	B	127	130	anti-parallel
Strand 4	B	49	64	anti-parallel
Strand 5	B	172	180	anti-parallel
Strand 6	B	15	20	anti-parallel
Strand 7	B	206	210	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	133	140	anti-parallel
Strand 3	C	105	108	parallel
Strand 4	C	155	159	anti-parallel
Strand 5	C	67	76	parallel
Strand 6	C	51	64	anti-parallel
Strand 7	C	171	179	anti-parallel
Strand 8	C	16	20	anti-parallel
Strand 9	C	206	210	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	133	140	anti-parallel
Strand 3	C	127	130	anti-parallel
Strand 4	C	51	64	anti-parallel
Strand 5	C	171	179	anti-parallel
Strand 6	C	16	20	anti-parallel
Strand 7	C	206	210	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	91	first strand
Strand 2	D	133	140	anti-parallel
Strand 3	D	105	108	parallel
Strand 4	D	155	159	anti-parallel
Strand 5	D	67	76	parallel
Strand 6	D	49	64	anti-parallel
Strand 7	D	171	180	anti-parallel
Strand 8	D	15	20	anti-parallel
Strand 9	D	206	210	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	91	first strand
Strand 2	D	133	140	anti-parallel
Strand 3	D	127	130	anti-parallel
Strand 4	D	49	64	anti-parallel
Strand 5	D	171	180	anti-parallel
Strand 6	D	15	20	anti-parallel
Strand 7	D	206	210	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	178	first strand
Strand 2	E	15	17	anti-parallel
Strand 3	E	209	211	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	76	first strand
Strand 2	E	156	159	parallel
Strand 3	E	105	108	anti-parallel
Strand 4	E	133	140	parallel
Strand 5	E	90	91	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	76	first strand
Strand 2	E	156	159	parallel
Strand 3	E	105	108	anti-parallel
Strand 4	E	133	140	parallel
Strand 5	E	127	130	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	55	first strand
Strand 2	F	175	179	anti-parallel
Strand 3	F	16	20	anti-parallel
Strand 4	F	206	210	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	91	first strand
Strand 2	F	133	140	anti-parallel
Strand 3	F	127	130	anti-parallel
Strand 4	F	57	64	anti-parallel
Strand 5	F	67	76	anti-parallel
Strand 6	F	155	159	parallel
Strand 7	F	105	108	anti-parallel
Strand 8	F	133	140	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	156	159	first strand
Strand 2	G	71	76	parallel
Strand 3	G	49	60	anti-parallel
Strand 4	G	172	180	anti-parallel
Strand 5	G	15	20	anti-parallel
Strand 6	G	206	210	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	91	first strand
Strand 2	G	139	140	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	105	106	first strand
Strand 2	G	133	137	parallel
Strand 3	G	127	130	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C59

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C59