Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C5C entry

There is 1 chain in PDB entry 5C5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 40TRP 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5C5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 91Right-handed alpha
Helix 2
AA2
A
111 120Right-handed alpha
Helix 3
AA3
A
121 124Right-handed 310
Helix 4
AA4
A
158 172Right-handed alpha
Helix 5
AA5
A
183 188Right-handed 310
Helix 6
AA6
A
201 216Right-handed alpha
Helix 7
AA7
A
228 246Right-handed alpha
Helix 8
AA8
A
266 276Right-handed alpha
Helix 9
AA9
A
288 302Right-handed alpha
Helix 10
AB1
A
343 352Right-handed alpha
Helix 11
AB2
A
363 372Right-handed alpha
Helix 12
AB3
A
407 430Right-handed alpha
Helix 13
AB4
A
437 454Right-handed alpha
Helix 14
AB5
A
506 509Right-handed 310
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There are 4 sheets in PDB entry 5C5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
101 107anti-parallel
Strand 3
A
49 55parallel
Strand 4
A
150 154parallel
Strand 5
A
176 178parallel
Strand 6
A
195 197parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
67 70anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 256first strand
Strand 2
A
220 226parallel
Strand 3
A
282 287parallel
Strand 4
A
308 312parallel
Strand 5
A
334 338parallel
Strand 6
A
477 483anti-parallel
Strand 7
A
491 498anti-parallel
Strand 8
A
502 504anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
464 465anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il