Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C5D entry

There are 4 chains in PDB entry 5C5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2ARG 159
B
 MET 1LYS 158
C
 MET 1LYS 158
D
 MET 1ARG 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 5C5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 13Right-handed 310
Helix 2
AA2
A
14 28Right-handed alpha
Helix 3
AA3
A
42 55Right-handed alpha
Helix 4
AA4
A
71 80Right-handed alpha
Helix 5
AA5
A
92 97Right-handed 310
Helix 6
AA6
A
98 104Right-handed alpha
Helix 7
AA7
A
116 129Right-handed alpha
Helix 8
AA8
A
132 158Right-handed alpha
Helix 9
AA9
B
11 13Right-handed 310
Helix 10
AB1
B
14 28Right-handed alpha
Helix 11
AB2
B
42 55Right-handed alpha
Helix 12
AB3
B
71 80Right-handed alpha
Helix 13
AB4
B
92 97Right-handed 310
Helix 14
AB5
B
98 104Right-handed alpha
Helix 15
AB6
B
116 129Right-handed alpha
Helix 16
AB7
B
132 156Right-handed alpha
Helix 17
AB8
C
11 13Right-handed 310
Helix 18
AB9
C
14 28Right-handed alpha
Helix 19
AC1
C
42 55Right-handed alpha
Helix 20
AC2
C
71 80Right-handed alpha
Helix 21
AC3
C
92 97Right-handed 310
Helix 22
AC4
C
98 104Right-handed alpha
Helix 23
AC5
C
116 129Right-handed alpha
Helix 24
AC6
C
132 156Right-handed alpha
Helix 25
AC7
D
11 13Right-handed 310
Helix 26
AC8
D
14 28Right-handed alpha
Helix 27
AC9
D
42 55Right-handed alpha
Helix 28
AD1
D
71 80Right-handed alpha
Helix 29
AD2
D
92 97Right-handed 310
Helix 30
AD3
D
98 104Right-handed alpha
Helix 31
AD4
D
116 130Right-handed alpha
Helix 32
AD5
D
132 158Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5C5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
4 9parallel
Strand 3
A
60 65parallel
Strand 4
A
84 86parallel
Strand 5
A
112 113parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
4 9parallel
Strand 3
B
60 65parallel
Strand 4
B
84 86parallel
Strand 5
B
112 113parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 36first strand
Strand 2
C
4 9parallel
Strand 3
C
60 65parallel
Strand 4
C
84 86parallel
Strand 5
C
112 113parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 36first strand
Strand 2
D
4 9parallel
Strand 3
D
60 65parallel
Strand 4
D
84 86parallel
Strand 5
D
112 113parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il