Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C5E entry

There are 4 chains in PDB entry 5C5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 284
G
 ASP 500LYS 515
B
 MET 1THR 284
H
 ASP 500SER 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5C5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
36 47Right-handed alpha
Helix 3
AA3
A
48 51Right-handed 310
Helix 4
AA4
A
62 73Right-handed alpha
Helix 5
AA5
A
113 129Right-handed alpha
Helix 6
AA6
A
151 164Right-handed alpha
Helix 7
AA7
A
174 178Right-handed 310
Helix 8
AA8
A
183 204Right-handed alpha
Helix 9
AA9
A
211 226Right-handed alpha
Helix 10
AB1
A
229 250Right-handed alpha
Helix 11
AB2
A
256 261Right-handed alpha
Helix 12
AB3
A
261 279Right-handed alpha
Helix 13
AB4
G
501 513Right-handed alpha
Helix 14
AB5
B
13 24Right-handed alpha
Helix 15
AB6
B
36 46Right-handed alpha
Helix 16
AB7
B
47 51Right-handed 310
Helix 17
AB8
B
62 73Right-handed alpha
Helix 18
AB9
B
113 129Right-handed alpha
Helix 19
AC1
B
150 162Right-handed alpha
Helix 20
AC2
B
174 178Right-handed 310
Helix 21
AC3
B
183 205Right-handed alpha
Helix 22
AC4
B
211 226Right-handed alpha
Helix 23
AC5
B
229 249Right-handed alpha
Helix 24
AC6
B
254 260Right-handed 310
Helix 25
AC7
B
261 280Right-handed alpha
Helix 26
AC8
H
501 515Right-handed alpha
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There are 4 sheets in PDB entry 5C5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
5 10parallel
Strand 3
A
53 56parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
104 106parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 171first strand
Strand 2
B
165 171anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 34first strand
Strand 2
B
5 10parallel
Strand 3
B
53 57parallel
Strand 4
B
79 82parallel
Strand 5
B
104 106parallel
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