Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C5H entry

There are 2 chains in PDB entry 5C5H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	GLN 450
B	HIS 0	GLN 451

There are 32 helices in PDB entry 5C5H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	16	Right-handed alpha
Helix 2	AA2	A	30	47	Right-handed alpha
Helix 3	AA3	A	62	75	Right-handed alpha
Helix 4	AA4	A	87	95	Right-handed alpha
Helix 5	AA5	A	96	98	Right-handed 310
Helix 6	AA6	A	156	168	Right-handed alpha
Helix 7	AA7	A	186	200	Right-handed alpha
Helix 8	AA8	A	210	215	Right-handed alpha
Helix 9	AA9	A	224	235	Right-handed alpha
Helix 10	AB1	A	251	261	Right-handed alpha
Helix 11	AB2	A	272	275	Right-handed 310
Helix 12	AB3	A	352	354	Right-handed 310
Helix 13	AB4	A	363	372	Right-handed alpha
Helix 14	AB5	A	409	414	Right-handed 310
Helix 15	AB6	A	416	420	Right-handed 310
Helix 16	AB7	A	439	449	Right-handed alpha
Helix 17	AB8	B	6	16	Right-handed alpha
Helix 18	AB9	B	30	47	Right-handed alpha
Helix 19	AC1	B	62	75	Right-handed alpha
Helix 20	AC2	B	87	95	Right-handed alpha
Helix 21	AC3	B	96	99	Right-handed 310
Helix 22	AC4	B	156	168	Right-handed alpha
Helix 23	AC5	B	186	200	Right-handed alpha
Helix 24	AC6	B	210	215	Right-handed alpha
Helix 25	AC7	B	224	234	Right-handed alpha
Helix 26	AC8	B	251	261	Right-handed alpha
Helix 27	AC9	B	272	275	Right-handed 310
Helix 28	AD1	B	352	354	Right-handed 310
Helix 29	AD2	B	363	373	Right-handed alpha
Helix 30	AD3	B	409	414	Right-handed 310
Helix 31	AD4	B	416	420	Right-handed 310
Helix 32	AD5	B	439	450	Right-handed alpha

There are 13 sheets in PDB entry 5C5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	19	23	anti-parallel
Strand 3	A	202	205	parallel
Strand 4	A	177	179	parallel
Strand 5	A	220	223	parallel
Strand 6	A	242	245	parallel
Strand 7	A	265	271	parallel
Strand 8	A	276	282	anti-parallel
Strand 9	A	291	292	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	82	first strand
Strand 2	A	54	58	parallel
Strand 3	A	102	104	parallel
Strand 4	A	116	118	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	141	first strand
Strand 2	A	151	155	anti-parallel
Strand 3	A	315	318	anti-parallel
Strand 4	A	321	323	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	301	first strand
Strand 2	A	304	309	anti-parallel
Strand 3	A	332	341	anti-parallel
Strand 4	A	344	350	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	357	first strand
Strand 2	A	360	362	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	387	first strand
Strand 2	A	391	400	anti-parallel
Strand 3	A	424	426	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	202	205	parallel
Strand 4	B	177	179	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	82	first strand
Strand 2	B	54	58	parallel
Strand 3	B	102	104	parallel
Strand 4	B	116	118	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	141	first strand
Strand 2	B	151	155	anti-parallel
Strand 3	B	315	318	anti-parallel
Strand 4	B	321	323	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	242	245	parallel
Strand 3	B	265	271	parallel
Strand 4	B	276	282	anti-parallel
Strand 5	B	291	292	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	301	first strand
Strand 2	B	304	309	anti-parallel
Strand 3	B	332	341	anti-parallel
Strand 4	B	344	350	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	357	first strand
Strand 2	B	360	362	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	387	first strand
Strand 2	B	391	400	anti-parallel
Strand 3	B	424	426	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C5H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5H