Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C5K entry

There are 3 chains in PDB entry 5C5K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 7	LEU 502
B	PRO 7	LEU 502
C	PRO 7	LEU 346

There are 73 helices in PDB entry 5C5K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	57	63	Right-handed alpha
Helix 3	AA3	A	65	70	Right-handed alpha
Helix 4	AA4	A	73	78	Right-handed alpha
Helix 5	AA5	A	81	89	Right-handed alpha
Helix 6	AA6	A	138	149	Right-handed alpha
Helix 7	AA7	A	152	169	Right-handed alpha
Helix 8	AA8	A	204	208	Right-handed 310
Helix 9	AA9	A	209	219	Right-handed alpha
Helix 10	AB1	A	257	267	Right-handed alpha
Helix 11	AB2	A	298	344	Right-handed alpha
Helix 12	AB3	A	347	353	Right-handed alpha
Helix 13	AB4	A	358	364	Right-handed alpha
Helix 14	AB5	A	384	398	Right-handed alpha
Helix 15	AB6	A	407	412	Right-handed alpha
Helix 16	AB7	A	413	419	Right-handed 310
Helix 17	AB8	A	464	476	Right-handed alpha
Helix 18	AB9	A	484	501	Right-handed alpha
Helix 19	AC1	B	11	15	Right-handed 310
Helix 20	AC2	B	57	63	Right-handed alpha
Helix 21	AC3	B	65	70	Right-handed alpha
Helix 22	AC4	B	73	78	Right-handed alpha
Helix 23	AC5	B	81	89	Right-handed alpha
Helix 24	AC6	B	134	149	Right-handed alpha
Helix 25	AC7	B	152	169	Right-handed alpha
Helix 26	AC8	B	204	208	Right-handed 310
Helix 27	AC9	B	209	219	Right-handed alpha
Helix 28	AD1	B	257	267	Right-handed alpha
Helix 29	AD2	B	298	344	Right-handed alpha
Helix 30	AD3	B	349	353	Right-handed alpha
Helix 31	AD4	B	358	364	Right-handed alpha
Helix 32	AD5	B	384	398	Right-handed alpha
Helix 33	AD6	B	407	412	Right-handed alpha
Helix 34	AD7	B	413	416	Right-handed 310
Helix 35	AD8	B	464	476	Right-handed alpha
Helix 36	AD9	B	484	502	Right-handed alpha
Helix 37	AE1	C	11	15	Right-handed 310
Helix 38	AE2	C	57	63	Right-handed alpha
Helix 39	AE3	C	65	70	Right-handed alpha
Helix 40	AE4	C	73	78	Right-handed alpha
Helix 41	AE5	C	81	89	Right-handed alpha
Helix 42	AE6	C	139	149	Right-handed alpha
Helix 43	AE7	C	152	169	Right-handed alpha
Helix 44	AE8	C	204	208	Right-handed 310
Helix 45	AE9	C	209	219	Right-handed alpha
Helix 46	AF1	C	257	267	Right-handed alpha
Helix 47	AF2	C	298	344	Right-handed alpha
Helix 48	AF3	C	347	353	Right-handed alpha
Helix 49	AF4	C	358	363	Right-handed alpha
Helix 50	AF5	C	384	398	Right-handed alpha
Helix 51	AF6	C	407	412	Right-handed alpha
Helix 52	AF7	C	413	417	Right-handed 310
Helix 53	AF8	C	464	476	Right-handed alpha
Helix 54	AF9	C	484	500	Right-handed alpha
Helix 55	AG1	C	501	503	Right-handed 310
Helix 56	AG2	D	11	15	Right-handed 310
Helix 57	AG3	D	57	63	Right-handed alpha
Helix 58	AG4	D	65	70	Right-handed alpha
Helix 59	AG5	D	73	78	Right-handed alpha
Helix 60	AG6	D	81	89	Right-handed alpha
Helix 61	AG7	D	140	149	Right-handed alpha
Helix 62	AG8	D	152	169	Right-handed alpha
Helix 63	AG9	D	204	208	Right-handed 310
Helix 64	AH1	D	209	219	Right-handed alpha
Helix 65	AH2	D	257	267	Right-handed alpha
Helix 66	AH3	D	298	344	Right-handed alpha
Helix 67	AH4	D	347	353	Right-handed alpha
Helix 68	AH5	D	358	364	Right-handed alpha
Helix 69	AH6	D	384	398	Right-handed alpha
Helix 70	AH7	D	407	412	Right-handed alpha
Helix 71	AH8	D	413	417	Right-handed 310
Helix 72	AH9	D	465	476	Right-handed alpha
Helix 73	AI1	D	484	500	Right-handed alpha

There are 12 sheets in PDB entry 5C5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	A	51	55	anti-parallel
Strand 4	A	40	45	anti-parallel
Strand 5	A	121	128	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	98	105	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	184	191	anti-parallel
Strand 3	A	172	178	anti-parallel
Strand 4	A	282	291	anti-parallel
Strand 5	A	271	279	anti-parallel
Strand 6	A	221	224	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	380	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	437	442	anti-parallel
Strand 4	A	424	429	anti-parallel
Strand 5	A	402	405	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	51	55	anti-parallel
Strand 4	B	40	45	anti-parallel
Strand 5	B	121	128	anti-parallel
Strand 6	B	109	118	anti-parallel
Strand 7	B	98	105	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	184	191	anti-parallel
Strand 3	B	172	178	anti-parallel
Strand 4	B	282	291	anti-parallel
Strand 5	B	271	279	anti-parallel
Strand 6	B	221	224	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	380	first strand
Strand 2	B	367	372	anti-parallel
Strand 3	B	437	442	anti-parallel
Strand 4	B	424	429	anti-parallel
Strand 5	B	402	405	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	232	235	anti-parallel
Strand 3	C	51	55	anti-parallel
Strand 4	C	40	45	anti-parallel
Strand 5	C	121	128	anti-parallel
Strand 6	C	110	118	anti-parallel
Strand 7	C	98	104	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	184	191	anti-parallel
Strand 3	C	172	178	anti-parallel
Strand 4	C	282	291	anti-parallel
Strand 5	C	271	279	anti-parallel
Strand 6	C	221	224	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	380	first strand
Strand 2	C	367	372	anti-parallel
Strand 3	C	437	442	anti-parallel
Strand 4	C	424	429	anti-parallel
Strand 5	C	402	405	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	232	235	anti-parallel
Strand 3	D	51	55	anti-parallel
Strand 4	D	40	45	anti-parallel
Strand 5	D	121	128	anti-parallel
Strand 6	D	110	118	anti-parallel
Strand 7	D	98	104	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	184	191	anti-parallel
Strand 3	D	172	178	anti-parallel
Strand 4	D	282	291	anti-parallel
Strand 5	D	271	279	anti-parallel
Strand 6	D	221	224	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	380	first strand
Strand 2	D	367	372	anti-parallel
Strand 3	D	437	442	anti-parallel
Strand 4	D	424	429	anti-parallel
Strand 5	D	402	405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C5K

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5K