Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C5T entry

There are 2 chains in PDB entry 5C5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31VAL 227
B
 GLY 31LYS 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 5C5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 36Right-handed 310
Helix 2
AA2
A
46 60Right-handed alpha
Helix 3
AA3
A
95 110Right-handed alpha
Helix 4
AA4
A
111 113Right-handed 310
Helix 5
AA5
A
202 206Right-handed 310
Helix 6
AA6
B
32 36Right-handed 310
Helix 7
AA7
B
46 60Right-handed alpha
Helix 8
AA8
B
95 110Right-handed alpha
Helix 9
AA9
B
111 113Right-handed 310
Helix 10
AB1
B
202 206Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5C5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
188 192anti-parallel
Strand 3
A
153 162anti-parallel
Strand 4
A
217 225anti-parallel
Strand 5
A
125 129anti-parallel
Strand 6
A
86 89anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
188 192anti-parallel
Strand 3
A
153 162anti-parallel
Strand 4
A
217 225anti-parallel
Strand 5
A
120 121anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
207 209anti-parallel
Strand 4
A
172 174anti-parallel
Strand 5
A
179 181anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
188 192anti-parallel
Strand 3
B
153 162anti-parallel
Strand 4
B
217 225anti-parallel
Strand 5
B
125 129anti-parallel
Strand 6
B
86 89anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
188 192anti-parallel
Strand 3
B
153 162anti-parallel
Strand 4
B
217 225anti-parallel
Strand 5
B
120 121anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 138first strand
Strand 2
B
207 209anti-parallel
Strand 3
B
172 174anti-parallel
Strand 4
B
179 181anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il