Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C5U entry

There are 2 chains in PDB entry 5C5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 34VAL 241
B
 SER 33LYS 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5C5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 50Right-handed 310
Helix 2
AA2
A
60 74Right-handed alpha
Helix 3
AA3
A
109 125Right-handed alpha
Helix 4
AA4
A
216 220Right-handed 310
Helix 5
AA5
B
46 50Right-handed 310
Helix 6
AA6
B
60 74Right-handed alpha
Helix 7
AA7
B
109 125Right-handed alpha
Helix 8
AA8
B
216 220Right-handed 310
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There are 6 sheets in PDB entry 5C5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
202 206anti-parallel
Strand 3
A
167 176anti-parallel
Strand 4
A
231 239anti-parallel
Strand 5
A
139 143anti-parallel
Strand 6
A
101 103anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
202 206anti-parallel
Strand 3
A
167 176anti-parallel
Strand 4
A
231 239anti-parallel
Strand 5
A
134 135anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
186 188anti-parallel
Strand 3
A
222 223anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 55first strand
Strand 2
B
202 206anti-parallel
Strand 3
B
167 176anti-parallel
Strand 4
B
231 239anti-parallel
Strand 5
B
139 143anti-parallel
Strand 6
B
101 103anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 55first strand
Strand 2
B
202 206anti-parallel
Strand 3
B
167 176anti-parallel
Strand 4
B
231 239anti-parallel
Strand 5
B
134 135anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 195first strand
Strand 2
B
186 188anti-parallel
Strand 3
B
222 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il