Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C5V entry

There are 2 chains in PDB entry 5C5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 73	LEU 414
B	THR 73	LEU 414

There are 24 helices in PDB entry 5C5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	87	Right-handed alpha
Helix 2	AA2	A	97	109	Right-handed alpha
Helix 3	AA3	A	110	112	Right-handed 310
Helix 4	AA4	A	114	126	Right-handed alpha
Helix 5	AA5	A	133	142	Right-handed alpha
Helix 6	AA6	A	144	160	Right-handed alpha
Helix 7	AA7	A	199	204	Right-handed alpha
Helix 8	AA8	A	348	354	Right-handed alpha
Helix 9	AA9	A	356	368	Right-handed alpha
Helix 10	AB1	A	369	373	Right-handed 310
Helix 11	AB2	A	381	383	Right-handed 310
Helix 12	AB3	A	388	407	Right-handed alpha
Helix 13	AB4	B	74	87	Right-handed alpha
Helix 14	AB5	B	97	110	Right-handed alpha
Helix 15	AB6	B	113	126	Right-handed alpha
Helix 16	AB7	B	132	143	Right-handed alpha
Helix 17	AB8	B	144	160	Right-handed alpha
Helix 18	AB9	B	199	204	Right-handed alpha
Helix 19	AC1	B	340	344	Right-handed 310
Helix 20	AC2	B	348	354	Right-handed alpha
Helix 21	AC3	B	356	368	Right-handed alpha
Helix 22	AC4	B	369	373	Right-handed 310
Helix 23	AC5	B	381	383	Right-handed 310
Helix 24	AC6	B	388	407	Right-handed alpha

There are 11 sheets in PDB entry 5C5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	131	132	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	173	first strand
Strand 2	A	182	189	anti-parallel
Strand 3	A	195	198	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	387	first strand
Strand 2	A	310	319	anti-parallel
Strand 3	A	330	335	anti-parallel
Strand 4	A	296	299	parallel
Strand 5	A	269	272	anti-parallel
Strand 6	A	224	230	anti-parallel
Strand 7	A	310	319	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	249	251	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	254	first strand
Strand 2	A	257	258	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	327	first strand
Strand 2	A	321	323	anti-parallel
Strand 3	A	378	379	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	173	first strand
Strand 2	B	182	189	anti-parallel
Strand 3	B	195	198	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	387	first strand
Strand 2	B	310	319	anti-parallel
Strand 3	B	330	335	anti-parallel
Strand 4	B	296	299	parallel
Strand 5	B	269	272	anti-parallel
Strand 6	B	224	230	anti-parallel
Strand 7	B	310	319	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	240	first strand
Strand 2	B	249	251	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	254	first strand
Strand 2	B	257	258	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	321	323	anti-parallel
Strand 3	B	378	379	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5V