Analysis of interatomic Contacts of Structural Units in PDB entry:
5C69


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C69 entry

There is 1 chain in PDB entry 5C69 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 27ILE 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5C69. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 97Right-handed alpha
Helix 2
AA2
A
110 115Right-handed 310
Helix 3
AA3
A
121 131Right-handed alpha
Helix 4
AA4
A
135 144Right-handed alpha
Helix 5
AA5
A
168 176Right-handed alpha
Helix 6
AA6
A
177 181Right-handed 310
Helix 7
AA7
A
189 213Right-handed alpha
Helix 8
AA8
A
226 236Right-handed alpha
Helix 9
AA9
A
240 249Right-handed alpha
Helix 10
AB1
A
250 257Right-handed alpha
Helix 11
AB2
A
327 331Right-handed 310
Helix 12
AB3
A
343 345Right-handed 310
Helix 13
AB4
A
349 352Right-handed 310
Helix 14
AB5
A
353 358Right-handed alpha
Helix 15
AB6
A
446 451Right-handed 310
Helix 16
AB7
A
465 479Right-handed alpha
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There are 6 sheets in PDB entry 5C69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
337 341anti-parallel
Strand 3
A
38 49parallel
Strand 4
A
281 291anti-parallel
Strand 5
A
313 318anti-parallel
Strand 6
A
321 325anti-parallel
Strand 7
A
346 348anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
337 341anti-parallel
Strand 3
A
38 49parallel
Strand 4
A
29 33anti-parallel
Strand 5
A
438 442parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
159 167anti-parallel
Strand 3
A
51 60parallel
Strand 4
A
269 278anti-parallel
Strand 5
A
259 266anti-parallel
Strand 6
A
216 217anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
306 309anti-parallel
Strand 3
A
367 371anti-parallel
Strand 4
A
463 464anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
384 389anti-parallel
Strand 3
A
411 416anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 407first strand
Strand 2
A
395 399anti-parallel
Strand 3
A
422 425anti-parallel
Strand 4
A
428 431anti-parallel
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