Analysis of interatomic Contacts of Structural Units in PDB entry:
5C6C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C6C entry

There are 2 chains in PDB entry 5C6C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 150ARG 268
B
 ARG 148ARG 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5C6C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
152 165Right-handed alpha
Helix 2
AA2
A
173 184Right-handed alpha
Helix 3
AA3
A
233 238Right-handed alpha
Helix 4
AA4
A
259 267Right-handed alpha
Helix 5
AA5
B
152 166Right-handed alpha
Helix 6
AA6
B
173 184Right-handed alpha
Helix 7
AA7
B
232 239Right-handed alpha
Helix 8
AA8
B
259 266Right-handed alpha
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There are 4 sheets in PDB entry 5C6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
252 258anti-parallel
Strand 3
A
204 210anti-parallel
Strand 4
A
230 231anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
213 217anti-parallel
Strand 4
A
220 225anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 189first strand
Strand 2
B
252 258anti-parallel
Strand 3
B
204 210anti-parallel
Strand 4
B
230 231anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
245 248anti-parallel
Strand 3
B
213 216anti-parallel
Strand 4
B
223 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il