Analysis of interatomic Contacts of Structural Units in PDB entry:
5C6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C6D entry

There are 4 chains in PDB entry 5C6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 561LEU 881
B
 SER 560LEU 881
C
 SER 652SER 664
D
 GLY 656ARG 662
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5C6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
571 575Right-handed 310
Helix 2
AA2
A
601 614Right-handed alpha
Helix 3
AA3
A
616 618Right-handed 310
Helix 4
AA4
A
647 652Right-handed alpha
Helix 5
AA5
A
713 715Right-handed 310
Helix 6
AA6
A
716 725Right-handed alpha
Helix 7
AA7
A
752 757Right-handed alpha
Helix 8
AA8
A
772 778Right-handed 310
Helix 9
AA9
A
782 792Right-handed alpha
Helix 10
AB1
A
818 830Right-handed alpha
Helix 11
AB2
A
833 835Right-handed 310
Helix 12
AB3
A
860 866Right-handed alpha
Helix 13
AB4
B
560 562Right-handed 310
Helix 14
AB5
B
571 575Right-handed 310
Helix 15
AB6
B
601 614Right-handed alpha
Helix 16
AB7
B
616 618Right-handed 310
Helix 17
AB8
B
647 652Right-handed alpha
Helix 18
AB9
B
666 670Right-handed 310
Helix 19
AC1
B
712 715Right-handed 310
Helix 20
AC2
B
716 724Right-handed alpha
Helix 21
AC3
B
752 757Right-handed alpha
Helix 22
AC4
B
772 778Right-handed 310
Helix 23
AC5
B
782 792Right-handed alpha
Helix 24
AC6
B
818 831Right-handed alpha
Helix 25
AC7
B
833 835Right-handed 310
Helix 26
AC8
B
860 865Right-handed alpha
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There are 5 sheets in PDB entry 5C6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
633 635first strand
Strand 2
A
620 627anti-parallel
Strand 3
A
658 664anti-parallel
Strand 4
A
564 570parallel
Strand 5
A
588 597anti-parallel
Strand 6
B
588 597anti-parallel
Strand 7
B
564 570anti-parallel
Strand 8
B
658 664parallel
Strand 9
B
620 627anti-parallel
Strand 10
B
633 635anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 708first strand
Strand 2
A
684 693anti-parallel
Strand 3
A
764 770parallel
Strand 4
A
732 739anti-parallel
Strand 5
A
742 745anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 814first strand
Strand 2
A
793 800anti-parallel
Strand 3
A
875 880parallel
Strand 4
A
837 840anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
698 708first strand
Strand 2
B
684 693anti-parallel
Strand 3
B
764 770parallel
Strand 4
B
732 739anti-parallel
Strand 5
B
742 745anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
809 814first strand
Strand 2
B
793 800anti-parallel
Strand 3
B
874 880parallel
Strand 4
B
837 840anti-parallel
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