Analysis of interatomic Contacts of Structural Units in PDB entry:
5C6K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C6K entry

There are 2 chains in PDB entry 5C6K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 162GLU 326
B
 GLY 163VAL 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5C6K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 177Right-handed alpha
Helix 2
AA2
A
178 192Right-handed alpha
Helix 3
AA3
A
194 200Right-handed alpha
Helix 4
AA4
A
202 204Right-handed 310
Helix 5
AA5
A
227 235Right-handed alpha
Helix 6
AA6
A
247 259Right-handed alpha
Helix 7
AA7
A
265 268Right-handed 310
Helix 8
AA8
A
269 282Right-handed alpha
Helix 9
AA9
A
285 294Right-handed alpha
Helix 10
AB1
A
297 302Right-handed alpha
Helix 11
AB2
A
303 308Right-handed 310
Helix 12
AB3
A
313 319Right-handed alpha
Helix 13
AB4
B
166 177Right-handed alpha
Helix 14
AB5
B
178 192Right-handed alpha
Helix 15
AB6
B
194 200Right-handed alpha
Helix 16
AB7
B
202 204Right-handed 310
Helix 17
AB8
B
227 236Right-handed alpha
Helix 18
AB9
B
247 259Right-handed alpha
Helix 19
AC1
B
265 268Right-handed 310
Helix 20
AC2
B
269 282Right-handed alpha
Helix 21
AC3
B
285 294Right-handed alpha
Helix 22
AC4
B
297 302Right-handed alpha
Helix 23
AC5
B
303 308Right-handed 310
Helix 24
AC6
B
313 318Right-handed alpha
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There are 2 sheets in PDB entry 5C6K. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
210 213anti-parallel
Strand 3
A
222 225anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
210 213anti-parallel
Strand 3
B
222 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il