Analysis of interatomic Contacts of Structural Units in PDB entry:
5C6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C6M entry

There are 4 chains in PDB entry 5C6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 248
B
 MET 1ALA 248
C
 SER 2LEU 247
D
 SER 2ASP 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5C6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 14Right-handed alpha
Helix 2
AA2
A
25 36Right-handed alpha
Helix 3
AA3
A
49 51Right-handed 310
Helix 4
AA4
A
52 63Right-handed alpha
Helix 5
AA5
A
82 97Right-handed alpha
Helix 6
AA6
A
106 112Right-handed alpha
Helix 7
AA7
A
115 130Right-handed alpha
Helix 8
AA8
A
140 145Right-handed alpha
Helix 9
AA9
A
146 160Right-handed alpha
Helix 10
AB1
A
177 192Right-handed alpha
Helix 11
AB2
A
205 221Right-handed alpha
Helix 12
AB3
A
237 245Right-handed alpha
Helix 13
AB4
B
2 14Right-handed alpha
Helix 14
AB5
B
25 36Right-handed alpha
Helix 15
AB6
B
49 51Right-handed 310
Helix 16
AB7
B
52 63Right-handed alpha
Helix 17
AB8
B
82 97Right-handed alpha
Helix 18
AB9
B
106 112Right-handed alpha
Helix 19
AC1
B
115 130Right-handed alpha
Helix 20
AC2
B
140 145Right-handed alpha
Helix 21
AC3
B
146 160Right-handed alpha
Helix 22
AC4
B
177 192Right-handed alpha
Helix 23
AC5
B
205 221Right-handed alpha
Helix 24
AC6
B
237 245Right-handed alpha
Helix 25
AC7
C
3 14Right-handed alpha
Helix 26
AC8
C
25 36Right-handed alpha
Helix 27
AC9
C
49 51Right-handed 310
Helix 28
AD1
C
52 63Right-handed alpha
Helix 29
AD2
C
82 97Right-handed alpha
Helix 30
AD3
C
106 112Right-handed alpha
Helix 31
AD4
C
115 130Right-handed alpha
Helix 32
AD5
C
140 145Right-handed alpha
Helix 33
AD6
C
146 160Right-handed alpha
Helix 34
AD7
C
177 192Right-handed alpha
Helix 35
AD8
C
205 221Right-handed alpha
Helix 36
AD9
C
237 247Right-handed alpha
Helix 37
AE1
D
3 14Right-handed alpha
Helix 38
AE2
D
25 36Right-handed alpha
Helix 39
AE3
D
49 51Right-handed 310
Helix 40
AE4
D
52 64Right-handed alpha
Helix 41
AE5
D
82 97Right-handed alpha
Helix 42
AE6
D
106 113Right-handed alpha
Helix 43
AE7
D
115 130Right-handed alpha
Helix 44
AE8
D
140 145Right-handed alpha
Helix 45
AE9
D
146 161Right-handed alpha
Helix 46
AF1
D
177 192Right-handed alpha
Helix 47
AF2
D
205 221Right-handed alpha
Helix 48
AF3
D
237 245Right-handed alpha
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There are 8 sheets in PDB entry 5C6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
164 166parallel
Strand 3
A
134 138parallel
Strand 4
A
100 104parallel
Strand 5
A
69 74parallel
Strand 6
A
45 47parallel
Strand 7
A
15 18parallel
Strand 8
A
232 234parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
41 42anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
164 166parallel
Strand 3
B
134 138parallel
Strand 4
B
100 104parallel
Strand 5
B
69 74parallel
Strand 6
B
45 47parallel
Strand 7
B
15 18parallel
Strand 8
B
232 234parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
41 42anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 198first strand
Strand 2
C
164 166parallel
Strand 3
C
134 138parallel
Strand 4
C
100 104parallel
Strand 5
C
69 74parallel
Strand 6
C
45 47parallel
Strand 7
C
15 18parallel
Strand 8
C
232 234parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 38first strand
Strand 2
C
41 42anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
196 198first strand
Strand 2
D
164 166parallel
Strand 3
D
134 138parallel
Strand 4
D
100 104parallel
Strand 5
D
69 74parallel
Strand 6
D
45 48parallel
Strand 7
D
15 18parallel
Strand 8
D
232 234parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 38first strand
Strand 2
D
41 42anti-parallel
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