Analysis of interatomic Contacts of Structural Units in PDB entry:
5C6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C6P entry

There are 2 chains in PDB entry 5C6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5LEU 463
B
 VAL 1THR 91
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5C6P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 31Right-handed 310
Helix 2
AA2
A
37 46Right-handed alpha
Helix 3
AA3
A
57 62Right-handed alpha
Helix 4
AA4
A
63 76Right-handed alpha
Helix 5
AA5
A
76 84Right-handed alpha
Helix 6
AA6
A
93 117Right-handed alpha
Helix 7
AA7
A
139 144Right-handed alpha
Helix 8
AA8
A
145 147Right-handed 310
Helix 9
AA9
A
148 154Right-handed alpha
Helix 10
AB1
A
156 161Right-handed alpha
Helix 11
AB2
A
167 176Right-handed alpha
Helix 12
AB3
A
179 190Right-handed alpha
Helix 13
AB4
A
202 218Right-handed alpha
Helix 14
AB5
A
219 221Right-handed 310
Helix 15
AB6
A
245 256Right-handed alpha
Helix 16
AB7
A
277 282Right-handed alpha
Helix 17
AB8
A
283 293Right-handed alpha
Helix 18
AB9
A
294 299Right-handed alpha
Helix 19
AC1
A
300 314Right-handed alpha
Helix 20
AC2
A
327 344Right-handed alpha
Helix 21
AC3
A
374 379Right-handed alpha
Helix 22
AC4
A
399 403Right-handed 310
Helix 23
AC5
A
441 446Right-handed alpha
Helix 24
AC6
A
448 452Right-handed 310
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There are 2 sheets in PDB entry 5C6P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
17 21anti-parallel
Strand 3
B
56 58anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
84 87anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il