Analysis of interatomic Contacts of Structural Units in PDB entry:
5C6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C6T entry

There are 3 chains in PDB entry 5C6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 88TYR 696
H
 GLN 1VAL 118
L
 LEU 4VAL 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5C6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
172 183Right-handed alpha
Helix 2
AA2
A
284 288Right-handed 310
Helix 3
AA3
A
386 388Right-handed 310
Helix 4
AA4
A
389 404Right-handed alpha
Helix 5
AA5
A
479 522Right-handed alpha
Helix 6
AA6
A
524 534Right-handed alpha
Helix 7
AA7
A
596 598Right-handed 310
Helix 8
AA8
A
668 673Right-handed alpha
Helix 9
AA9
A
674 676Right-handed 310
Helix 10
AB1
A
679 691Right-handed alpha
Helix 11
AB2
H
63 66Right-handed 310
Helix 12
AB3
L
28 32Right-handed 310
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There are 14 sheets in PDB entry 5C6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 553first strand
Strand 2
A
92 95anti-parallel
Strand 3
A
600 601parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 378first strand
Strand 2
A
363 368anti-parallel
Strand 3
A
347 359anti-parallel
Strand 4
A
122 130anti-parallel
Strand 5
A
428 434anti-parallel
Strand 6
A
415 422anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 169first strand
Strand 2
A
136 155anti-parallel
Strand 3
A
243 259anti-parallel
Strand 4
A
266 268anti-parallel
Strand 5
A
273 274anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
224 227anti-parallel
Strand 3
A
243 259anti-parallel
Strand 4
A
136 155anti-parallel
Strand 5
A
331 335anti-parallel
Strand 6
A
317 324anti-parallel
Strand 7
A
298 305anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
210 212anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
197 201anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 561first strand
Strand 2
A
580 582anti-parallel
Strand 3
A
591 593anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 621first strand
Strand 2
A
624 628anti-parallel
Strand 3
A
633 637anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 7first strand
Strand 2
H
21 24anti-parallel
Strand 3
H
79 84anti-parallel
Strand 4
H
18 19anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 7first strand
Strand 2
H
21 24anti-parallel
Strand 3
H
79 84anti-parallel
Strand 4
H
69 74anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
59 61first strand
Strand 2
H
48 53anti-parallel
Strand 3
H
36 41anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
108 116anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 11first strand
Strand 2
L
104 106parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
21 23first strand
Strand 2
L
71 73anti-parallel
Strand 3
L
66 68anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
47 49first strand
Strand 2
L
35 39anti-parallel
Strand 3
L
86 90anti-parallel
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