Analysis of interatomic Contacts of Structural Units in PDB entry:
5C6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C6U entry

There is 1 chain in PDB entry 5C6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 2ALA 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5C6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 28Right-handed alpha
Helix 2
AA2
A
40 46Right-handed alpha
Helix 3
AA3
A
47 53Right-handed 310
Helix 4
AA4
A
75 87Right-handed alpha
Helix 5
AA5
A
89 91Right-handed 310
Helix 6
AA6
A
99 115Right-handed alpha
Helix 7
AA7
A
122 126Right-handed 310
Helix 8
AA8
A
139 149Right-handed alpha
Helix 9
AA9
A
164 175Right-handed alpha
Helix 10
AB1
A
196 206Right-handed alpha
Helix 11
AB2
A
235 243Right-handed alpha
Helix 12
AB3
A
271 286Right-handed alpha
Helix 13
AB4
A
290 302Right-handed alpha
Helix 14
AB5
A
303 334Right-handed alpha
Helix 15
AB6
A
358 368Right-handed alpha
Helix 16
AB7
A
380 384Right-handed 310
Helix 17
AB8
A
399 425Right-handed alpha
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There are 3 sheets in PDB entry 5C6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
371 372parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
266 269anti-parallel
Strand 3
A
249 254anti-parallel
Strand 4
A
214 218parallel
Strand 5
A
178 183parallel
Strand 6
A
131 136parallel
Strand 7
A
152 159parallel
Strand 8
A
162 163anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
350 353anti-parallel
Strand 3
A
390 393anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il