Analysis of interatomic Contacts of Structural Units in PDB entry:
5C70

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C70 entry

There are 2 chains in PDB entry 5C70 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -7	HIS 593
B	GLY -1	LEU 592

There are 25 helices in PDB entry 5C70. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	35	Right-handed 310
Helix 2	AA2	A	55	61	Right-handed alpha
Helix 3	AA3	A	74	78	Right-handed 310
Helix 4	AA4	A	309	324	Right-handed alpha
Helix 5	AA5	A	336	347	Right-handed alpha
Helix 6	AA6	A	382	401	Right-handed alpha
Helix 7	AA7	A	421	427	Right-handed alpha
Helix 8	AA8	A	427	437	Right-handed alpha
Helix 9	AA9	A	457	461	Right-handed 310
Helix 10	AB1	A	478	497	Right-handed alpha
Helix 11	AB2	A	523	539	Right-handed alpha
Helix 12	AB3	A	579	592	Right-handed alpha
Helix 13	AB4	B	31	35	Right-handed 310
Helix 14	AB5	B	48	52	Right-handed 310
Helix 15	AB6	B	55	61	Right-handed alpha
Helix 16	AB7	B	74	78	Right-handed 310
Helix 17	AB8	B	309	324	Right-handed alpha
Helix 18	AB9	B	336	347	Right-handed alpha
Helix 19	AC1	B	382	401	Right-handed alpha
Helix 20	AC2	B	421	427	Right-handed alpha
Helix 21	AC3	B	427	437	Right-handed alpha
Helix 22	AC4	B	457	461	Right-handed 310
Helix 23	AC5	B	478	497	Right-handed alpha
Helix 24	AC6	B	523	539	Right-handed alpha
Helix 25	AC7	B	579	592	Right-handed alpha

There are 15 sheets in PDB entry 5C70. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	171	179	anti-parallel
Strand 3	A	80	88	anti-parallel
Strand 4	A	112	115	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	64	72	anti-parallel
Strand 4	A	125	133	anti-parallel
Strand 5	A	92	97	anti-parallel
Strand 6	A	100	105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	155	159	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	193	first strand
Strand 2	A	196	205	anti-parallel
Strand 3	A	231	236	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	228	first strand
Strand 2	A	211	217	anti-parallel
Strand 3	A	250	257	anti-parallel
Strand 4	A	263	271	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	279	first strand
Strand 2	A	282	285	anti-parallel
Strand 3	A	288	289	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	296	first strand
Strand 2	A	327	329	parallel
Strand 3	A	349	353	parallel
Strand 4	A	406	413	parallel
Strand 5	A	442	446	parallel
Strand 6	A	464	467	parallel
Strand 7	A	501	505	parallel
Strand 8	A	544	549	parallel
Strand 9	A	292	296	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	171	178	anti-parallel
Strand 3	B	81	88	anti-parallel
Strand 4	B	112	115	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	18	23	anti-parallel
Strand 3	B	64	72	anti-parallel
Strand 4	B	125	133	anti-parallel
Strand 5	B	92	97	anti-parallel
Strand 6	B	100	105	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	155	157	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	204	205	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	193	first strand
Strand 2	B	196	202	anti-parallel
Strand 3	B	231	236	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	228	first strand
Strand 2	B	211	217	anti-parallel
Strand 3	B	250	257	anti-parallel
Strand 4	B	263	271	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	279	first strand
Strand 2	B	282	285	anti-parallel
Strand 3	B	288	289	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	296	first strand
Strand 2	B	327	329	parallel
Strand 3	B	349	353	parallel
Strand 4	B	406	413	parallel
Strand 5	B	442	446	parallel
Strand 6	B	464	466	parallel
Strand 7	B	501	503	parallel
Strand 8	B	544	549	parallel
Strand 9	B	292	296	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C70

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C70