Analysis of interatomic Contacts of Structural Units in PDB entry:
5C71

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C71 entry

There are 4 chains in PDB entry 5C71 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 593
B	MET 1	LEU 592
C	MET 1	HIS 593
D	MET 1	LEU 592

There are 51 helices in PDB entry 5C71. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	35	Right-handed 310
Helix 2	AA2	A	55	60	Right-handed alpha
Helix 3	AA3	A	74	78	Right-handed 310
Helix 4	AA4	A	309	323	Right-handed alpha
Helix 5	AA5	A	336	347	Right-handed alpha
Helix 6	AA6	A	382	401	Right-handed alpha
Helix 7	AA7	A	421	427	Right-handed alpha
Helix 8	AA8	A	427	437	Right-handed alpha
Helix 9	AA9	A	457	461	Right-handed 310
Helix 10	AB1	A	469	474	Right-handed alpha
Helix 11	AB2	A	478	497	Right-handed alpha
Helix 12	AB3	A	523	539	Right-handed alpha
Helix 13	AB4	A	579	590	Right-handed alpha
Helix 14	AB5	B	31	35	Right-handed 310
Helix 15	AB6	B	55	61	Right-handed alpha
Helix 16	AB7	B	309	324	Right-handed alpha
Helix 17	AB8	B	336	347	Right-handed alpha
Helix 18	AB9	B	382	401	Right-handed alpha
Helix 19	AC1	B	421	427	Right-handed alpha
Helix 20	AC2	B	427	437	Right-handed alpha
Helix 21	AC3	B	457	461	Right-handed 310
Helix 22	AC4	B	469	473	Right-handed 310
Helix 23	AC5	B	478	497	Right-handed alpha
Helix 24	AC6	B	523	539	Right-handed alpha
Helix 25	AC7	B	579	592	Right-handed alpha
Helix 26	AC8	C	31	35	Right-handed 310
Helix 27	AC9	C	55	60	Right-handed alpha
Helix 28	AD1	C	74	78	Right-handed 310
Helix 29	AD2	C	309	324	Right-handed alpha
Helix 30	AD3	C	336	347	Right-handed alpha
Helix 31	AD4	C	382	401	Right-handed alpha
Helix 32	AD5	C	421	427	Right-handed alpha
Helix 33	AD6	C	427	437	Right-handed alpha
Helix 34	AD7	C	457	461	Right-handed 310
Helix 35	AD8	C	469	474	Right-handed alpha
Helix 36	AD9	C	478	497	Right-handed alpha
Helix 37	AE1	C	523	539	Right-handed alpha
Helix 38	AE2	C	579	591	Right-handed alpha
Helix 39	AE3	D	31	35	Right-handed 310
Helix 40	AE4	D	55	60	Right-handed alpha
Helix 41	AE5	D	74	78	Right-handed 310
Helix 42	AE6	D	309	324	Right-handed alpha
Helix 43	AE7	D	336	346	Right-handed alpha
Helix 44	AE8	D	382	401	Right-handed alpha
Helix 45	AE9	D	421	427	Right-handed alpha
Helix 46	AF1	D	427	437	Right-handed alpha
Helix 47	AF2	D	457	461	Right-handed 310
Helix 48	AF3	D	469	473	Right-handed 310
Helix 49	AF4	D	478	497	Right-handed alpha
Helix 50	AF5	D	523	539	Right-handed alpha
Helix 51	AF6	D	579	591	Right-handed alpha

There are 29 sheets in PDB entry 5C71. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	173	178	anti-parallel
Strand 3	A	81	86	anti-parallel
Strand 4	A	112	115	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	64	72	anti-parallel
Strand 4	A	125	133	anti-parallel
Strand 5	A	92	97	anti-parallel
Strand 6	A	100	105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	155	159	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	193	first strand
Strand 2	A	196	205	anti-parallel
Strand 3	A	231	236	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	228	first strand
Strand 2	A	211	217	anti-parallel
Strand 3	A	250	257	anti-parallel
Strand 4	A	263	271	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	279	first strand
Strand 2	A	282	285	anti-parallel
Strand 3	A	288	289	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	296	first strand
Strand 2	A	327	329	parallel
Strand 3	A	349	353	parallel
Strand 4	A	406	413	parallel
Strand 5	A	442	446	parallel
Strand 6	A	464	467	parallel
Strand 7	A	501	505	parallel
Strand 8	A	544	550	parallel
Strand 9	A	292	296	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	173	178	anti-parallel
Strand 3	B	81	86	anti-parallel
Strand 4	B	112	115	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	18	23	anti-parallel
Strand 3	B	65	72	anti-parallel
Strand 4	B	125	133	anti-parallel
Strand 5	B	92	97	anti-parallel
Strand 6	B	100	105	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	168	169	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	155	159	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	193	first strand
Strand 2	B	196	205	anti-parallel
Strand 3	B	231	236	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	228	first strand
Strand 2	B	212	217	anti-parallel
Strand 3	B	250	257	anti-parallel
Strand 4	B	263	271	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	279	first strand
Strand 2	B	282	285	anti-parallel
Strand 3	B	288	289	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	296	first strand
Strand 2	B	327	329	parallel
Strand 3	B	349	353	parallel
Strand 4	B	406	413	parallel
Strand 5	B	442	446	parallel
Strand 6	B	464	467	parallel
Strand 7	B	501	505	parallel
Strand 8	B	544	549	parallel
Strand 9	B	292	296	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	173	178	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	112	115	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	64	72	anti-parallel
Strand 4	C	125	133	anti-parallel
Strand 5	C	92	97	anti-parallel
Strand 6	C	100	105	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	155	159	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	193	first strand
Strand 2	C	196	205	anti-parallel
Strand 3	C	231	236	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	228	first strand
Strand 2	C	211	217	anti-parallel
Strand 3	C	250	257	anti-parallel
Strand 4	C	263	271	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	279	first strand
Strand 2	C	282	285	anti-parallel
Strand 3	C	288	289	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	296	first strand
Strand 2	C	327	329	parallel
Strand 3	C	349	353	parallel
Strand 4	C	406	413	parallel
Strand 5	C	442	446	parallel
Strand 6	C	464	467	parallel
Strand 7	C	501	505	parallel
Strand 8	C	544	549	parallel
Strand 9	C	292	296	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	173	178	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	112	115	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	65	72	anti-parallel
Strand 4	D	125	133	anti-parallel
Strand 5	D	92	97	anti-parallel
Strand 6	D	100	105	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	148	first strand
Strand 2	D	155	159	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	193	first strand
Strand 2	D	196	205	anti-parallel
Strand 3	D	231	236	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	228	first strand
Strand 2	D	211	217	anti-parallel
Strand 3	D	250	257	anti-parallel
Strand 4	D	263	271	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	279	first strand
Strand 2	D	282	285	anti-parallel
Strand 3	D	288	289	anti-parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	296	first strand
Strand 2	D	327	329	parallel
Strand 3	D	349	353	parallel
Strand 4	D	406	413	parallel
Strand 5	D	442	446	parallel
Strand 6	D	464	467	parallel
Strand 7	D	501	505	parallel
Strand 8	D	544	550	parallel
Strand 9	D	292	296	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C71

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C71