Analysis of interatomic Contacts of Structural Units in PDB entry:
5C76

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C76 entry

There are 3 chains in PDB entry 5C76 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 564
B	MET 1	LYS 564
C	MET 1	LYS 105

There are 87 helices in PDB entry 5C76. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed alpha
Helix 2	AA2	A	10	37	Right-handed alpha
Helix 3	AA3	A	37	45	Right-handed alpha
Helix 4	AA4	A	56	62	Right-handed alpha
Helix 5	AA5	A	70	119	Right-handed alpha
Helix 6	AA6	A	120	127	Right-handed alpha
Helix 7	AA7	A	128	138	Right-handed alpha
Helix 8	AA8	A	138	171	Right-handed alpha
Helix 9	AA9	A	173	191	Right-handed alpha
Helix 10	AB1	A	193	221	Right-handed alpha
Helix 11	AB2	A	221	227	Right-handed alpha
Helix 12	AB3	A	231	256	Right-handed alpha
Helix 13	AB4	A	257	278	Right-handed alpha
Helix 14	AB5	A	287	317	Right-handed alpha
Helix 15	AB6	A	321	333	Right-handed alpha
Helix 16	AB7	A	387	396	Right-handed alpha
Helix 17	AB8	A	417	424	Right-handed alpha
Helix 18	AB9	A	438	442	Right-handed 310
Helix 19	AC1	A	451	461	Right-handed alpha
Helix 20	AC2	A	463	468	Right-handed alpha
Helix 21	AC3	A	472	476	Right-handed 310
Helix 22	AC4	A	487	501	Right-handed alpha
Helix 23	AC5	A	519	531	Right-handed alpha
Helix 24	AC6	B	4	9	Right-handed alpha
Helix 25	AC7	B	10	37	Right-handed alpha
Helix 26	AC8	B	38	45	Right-handed alpha
Helix 27	AC9	B	56	62	Right-handed alpha
Helix 28	AD1	B	72	119	Right-handed alpha
Helix 29	AD2	B	120	127	Right-handed alpha
Helix 30	AD3	B	128	138	Right-handed alpha
Helix 31	AD4	B	138	171	Right-handed alpha
Helix 32	AD5	B	173	191	Right-handed alpha
Helix 33	AD6	B	193	220	Right-handed alpha
Helix 34	AD7	B	221	227	Right-handed alpha
Helix 35	AD8	B	231	256	Right-handed alpha
Helix 36	AD9	B	257	276	Right-handed alpha
Helix 37	AE1	B	287	320	Right-handed alpha
Helix 38	AE2	B	321	333	Right-handed alpha
Helix 39	AE3	B	387	396	Right-handed alpha
Helix 40	AE4	B	417	424	Right-handed alpha
Helix 41	AE5	B	439	444	Right-handed alpha
Helix 42	AE6	B	451	461	Right-handed alpha
Helix 43	AE7	B	463	468	Right-handed alpha
Helix 44	AE8	B	486	501	Right-handed alpha
Helix 45	AE9	B	519	531	Right-handed alpha
Helix 46	AF1	C	2	9	Right-handed alpha
Helix 47	AF2	C	10	37	Right-handed alpha
Helix 48	AF3	C	38	44	Right-handed alpha
Helix 49	AF4	C	56	62	Right-handed alpha
Helix 50	AF5	C	72	119	Right-handed alpha
Helix 51	AF6	C	120	127	Right-handed alpha
Helix 52	AF7	C	128	138	Right-handed alpha
Helix 53	AF8	C	138	171	Right-handed alpha
Helix 54	AF9	C	171	191	Right-handed alpha
Helix 55	AG1	C	193	221	Right-handed alpha
Helix 56	AG2	C	221	227	Right-handed alpha
Helix 57	AG3	C	231	256	Right-handed alpha
Helix 58	AG4	C	257	276	Right-handed alpha
Helix 59	AG5	C	287	317	Right-handed alpha
Helix 60	AG6	C	321	333	Right-handed alpha
Helix 61	AG7	C	387	396	Right-handed alpha
Helix 62	AG8	C	417	424	Right-handed alpha
Helix 63	AG9	C	439	444	Right-handed alpha
Helix 64	AH1	C	451	461	Right-handed alpha
Helix 65	AH2	C	463	468	Right-handed alpha
Helix 66	AH3	C	487	501	Right-handed alpha
Helix 67	AH4	C	516	531	Right-handed alpha
Helix 68	AH5	D	4	9	Right-handed alpha
Helix 69	AH6	D	10	37	Right-handed alpha
Helix 70	AH7	D	38	45	Right-handed alpha
Helix 71	AH8	D	56	63	Right-handed alpha
Helix 72	AH9	D	72	119	Right-handed alpha
Helix 73	AI1	D	120	127	Right-handed alpha
Helix 74	AI2	D	128	171	Right-handed alpha
Helix 75	AI3	D	173	191	Right-handed alpha
Helix 76	AI4	D	193	221	Right-handed alpha
Helix 77	AI5	D	221	227	Right-handed alpha
Helix 78	AI6	D	231	256	Right-handed alpha
Helix 79	AI7	D	257	278	Right-handed alpha
Helix 80	AI8	D	287	320	Right-handed alpha
Helix 81	AI9	D	321	333	Right-handed alpha
Helix 82	AJ1	D	387	396	Right-handed alpha
Helix 83	AJ2	D	417	424	Right-handed alpha
Helix 84	AJ3	D	451	461	Right-handed alpha
Helix 85	AJ4	D	463	468	Right-handed alpha
Helix 86	AJ5	D	486	500	Right-handed alpha
Helix 87	AJ6	D	519	531	Right-handed alpha

There are 6 sheets in PDB entry 5C76. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	508	first strand
Strand 2	A	535	538	parallel
Strand 3	A	378	381	parallel
Strand 4	A	551	555	parallel
Strand 5	A	560	562	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	350	first strand
Strand 2	B	371	373	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	508	first strand
Strand 2	B	535	538	parallel
Strand 3	B	378	381	parallel
Strand 4	B	552	556	parallel
Strand 5	B	559	562	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	508	first strand
Strand 2	C	535	538	parallel
Strand 3	C	378	382	parallel
Strand 4	C	551	556	parallel
Strand 5	C	559	562	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	350	first strand
Strand 2	D	407	408	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	505	508	first strand
Strand 2	D	535	538	parallel
Strand 3	D	378	382	parallel
Strand 4	D	551	556	parallel
Strand 5	D	559	562	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C76

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C76